Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SMARCA1P28370 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC17.45■□□□□ 0.38
SMARCA1P28370 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC17.45■□□□□ 0.38
SMARCA1P28370 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.45■□□□□ 0.38
SMARCA1P28370 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC17.45■□□□□ 0.38
SMARCA1P28370 CSF2RBP1-201ENST00000447905 391 ntBASIC17.45■□□□□ 0.38
SMARCA1P28370 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 MIR4259-201ENST00000584466 101 ntBASIC17.45■□□□□ 0.38
SMARCA1P28370 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 AC133552.6-201ENST00000613406 534 ntBASIC17.45■□□□□ 0.38
SMARCA1P28370 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SMARCA1P28370 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
SMARCA1P28370 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC17.45■□□□□ 0.38
SMARCA1P28370 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC17.45■□□□□ 0.38
SMARCA1P28370 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC17.45■□□□□ 0.38
SMARCA1P28370 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SMARCA1P28370 AHCYP2-201ENST00000430630 1300 ntBASIC17.45■□□□□ 0.38
SMARCA1P28370 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC17.45■□□□□ 0.38
SMARCA1P28370 TCAF2P1-201ENST00000291129 2421 ntBASIC17.45■□□□□ 0.38
SMARCA1P28370 MECR-202ENST00000373791 2416 ntTSL 2 BASIC17.45■□□□□ 0.38
SMARCA1P28370 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.44■□□□□ 0.38
SMARCA1P28370 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SMARCA1P28370 ANKRD30BP2-201ENST00000435744 1610 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 ZEB1-AS1-208ENST00000607166 2503 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
SMARCA1P28370 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 MIR658-201ENST00000385210 100 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 AC026954.1-201ENST00000429771 1293 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SMARCA1P28370 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 KRT223P-202ENST00000449164 1292 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.44■□□□□ 0.38
SMARCA1P28370 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 AC023310.1-201ENST00000554836 735 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.44■□□□□ 0.38
SMARCA1P28370 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
SMARCA1P28370 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC17.44■□□□□ 0.38
SMARCA1P28370 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.44■□□□□ 0.38
SMARCA1P28370 DUX4L45-201ENST00000566406 1057 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC17.44■□□□□ 0.38
SMARCA1P28370 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC17.44■□□□□ 0.38
SMARCA1P28370 ECM1P1-201ENST00000604092 1279 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC17.44■□□□□ 0.38
SMARCA1P28370 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 AP000593.2-201ENST00000542775 1433 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
SMARCA1P28370 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 AL138725.1-201ENST00000407347 1314 ntBASIC17.44■□□□□ 0.38
SMARCA1P28370 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
SMARCA1P28370 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SMARCA1P28370 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC17.43■□□□□ 0.38
SMARCA1P28370 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SMARCA1P28370 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC17.43■□□□□ 0.38
SMARCA1P28370 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC17.43■□□□□ 0.38
SMARCA1P28370 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SMARCA1P28370 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC17.43■□□□□ 0.38
SMARCA1P28370 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms