Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP000845.1-201ENST00000581677 2131 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 MFF-204ENST00000353339 2186 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC005912.2-201ENST00000619492 2400 ntBASIC11.75□□□□□ -0.53
HLA-DMBP28068 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC11.75□□□□□ -0.53
HLA-DMBP28068 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC11.75□□□□□ -0.53
HLA-DMBP28068 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 TNNC2-201ENST00000372555 710 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 MIR943-201ENST00000401286 94 ntBASIC11.74□□□□□ -0.53
HLA-DMBP28068 RPL5P21-201ENST00000404620 815 ntBASIC11.74□□□□□ -0.53
HLA-DMBP28068 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 AC093214.1-201ENST00000511688 1107 ntBASIC11.74□□□□□ -0.53
HLA-DMBP28068 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 DUT-210ENST00000559935 569 ntTSL 3 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 AL035456.1-201ENST00000456064 1369 ntBASIC11.74□□□□□ -0.53
HLA-DMBP28068 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 PCDHGB8P-201ENST00000502926 1973 ntBASIC11.74□□□□□ -0.53
HLA-DMBP28068 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
HLA-DMBP28068 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
HLA-DMBP28068 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 AKNA-206ENST00000374088 5464 ntAPPRIS P2 TSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 AC007191.1-201ENST00000623179 2995 ntBASIC11.73□□□□□ -0.53
HLA-DMBP28068 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ATP2A3-202ENST00000352011 3274 ntTSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC11.73□□□□□ -0.53
HLA-DMBP28068 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
HLA-DMBP28068 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms