Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NAT9-220ENST00000582870 896 ntTSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 HPN-206ENST00000597419 1212 ntTSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 AC009884.2-201ENST00000603110 324 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 AC092171.5-201ENST00000608012 942 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 AC007881.3-201ENST00000608897 607 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC14.35□□□□□ -0.11
COL5A1P20908 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC14.35□□□□□ -0.11
COL5A1P20908 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.35□□□□□ -0.11
COL5A1P20908 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC14.35□□□□□ -0.11
COL5A1P20908 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
COL5A1P20908 AC074138.1-201ENST00000611182 1303 ntBASIC14.35□□□□□ -0.11
COL5A1P20908 AKR1A1-202ENST00000372070 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 OR2K2-202ENST00000374428 1038 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC14.34□□□□□ -0.11
COL5A1P20908 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 AL031713.1-201ENST00000564813 661 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 MIR3188-201ENST00000583494 85 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 AC087045.2-201ENST00000606279 1003 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 AP001065.2-201ENST00000617205 644 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 OR6A2-201ENST00000332601 1373 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
COL5A1P20908 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 AC079328.2-201ENST00000561241 3354 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 FRMPD2B-201ENST00000431305 1347 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
COL5A1P20908 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 C18orf15-201ENST00000623680 2534 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 PDZK1IP1-201ENST00000294338 846 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 RPS9P1-201ENST00000419943 583 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 AC130709.1-201ENST00000484779 1212 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.34□□□□□ -0.11
COL5A1P20908 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.34□□□□□ -0.11
COL5A1P20908 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC14.34□□□□□ -0.11
COL5A1P20908 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC14.34□□□□□ -0.11
COL5A1P20908 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.34□□□□□ -0.11
COL5A1P20908 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC14.34□□□□□ -0.11
COL5A1P20908 AC005632.3-201ENST00000605544 308 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 AIRN-201ENST00000601203 4374 ntBASIC14.34□□□□□ -0.11
COL5A1P20908 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
COL5A1P20908 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL5A1P20908 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL5A1P20908 AC022532.1-201ENST00000624563 1728 ntBASIC14.33□□□□□ -0.11
COL5A1P20908 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.33□□□□□ -0.11
COL5A1P20908 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL5A1P20908 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC14.33□□□□□ -0.11
COL5A1P20908 NTM-205ENST00000425719 1607 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
COL5A1P20908 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL5A1P20908 KRT8P31-201ENST00000504812 1408 ntBASIC14.33□□□□□ -0.11
COL5A1P20908 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
COL5A1P20908 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.33□□□□□ -0.12
COL5A1P20908 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 CYP4F23P-201ENST00000593402 1579 ntBASIC14.33□□□□□ -0.12
COL5A1P20908 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
COL5A1P20908 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
COL5A1P20908 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.33□□□□□ -0.12
COL5A1P20908 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.33□□□□□ -0.12
COL5A1P20908 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms