Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 IFNWP2-201ENST00000431203 580 ntBASIC15.42■□□□□ 0.06
COL6A3P12111 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.42■□□□□ 0.06
COL6A3P12111 AC009119.3-202ENST00000566773 196 ntTSL 3 BASIC15.42■□□□□ 0.06
COL6A3P12111 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 MIR6720-201ENST00000611664 98 ntBASIC15.42■□□□□ 0.06
COL6A3P12111 AC133540.1-201ENST00000620845 1019 ntBASIC15.42■□□□□ 0.06
COL6A3P12111 RARS-210ENST00000626454 177 ntTSL 5 BASIC15.42■□□□□ 0.06
COL6A3P12111 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC15.42■□□□□ 0.06
COL6A3P12111 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
COL6A3P12111 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
COL6A3P12111 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC15.42■□□□□ 0.06
COL6A3P12111 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC15.42■□□□□ 0.06
COL6A3P12111 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 RASGEF1B-202ENST00000335927 1756 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
COL6A3P12111 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 AC106886.4-201ENST00000623557 2502 ntBASIC15.42■□□□□ 0.06
COL6A3P12111 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.42■□□□□ 0.06
COL6A3P12111 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 KRT18P37-201ENST00000520711 1282 ntBASIC15.42■□□□□ 0.06
COL6A3P12111 FUCA1P1-201ENST00000374476 1351 ntBASIC15.42■□□□□ 0.06
COL6A3P12111 ALOX12P2-203ENST00000570921 1945 ntBASIC15.42■□□□□ 0.06
COL6A3P12111 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.42■□□□□ 0.06
COL6A3P12111 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC15.42■□□□□ 0.06
COL6A3P12111 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
COL6A3P12111 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.42■□□□□ 0.06
COL6A3P12111 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 AL773545.2-201ENST00000442149 472 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 AL121894.1-201ENST00000450971 436 ntTSL 2 BASIC15.41■□□□□ 0.06
COL6A3P12111 AC006529.1-201ENST00000459978 637 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 AC008026.2-201ENST00000495438 348 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 AL022334.2-201ENST00000610000 484 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 AL118522.1-201ENST00000611368 560 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 VASH2-204ENST00000366966 1369 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC15.41■□□□□ 0.06
COL6A3P12111 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 ZNF143-202ENST00000396597 1954 ntTSL 2 BASIC15.41■□□□□ 0.06
COL6A3P12111 AL137783.1-201ENST00000623494 1896 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC15.41■□□□□ 0.06
COL6A3P12111 CCL17-201ENST00000219244 615 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 PYY2-201ENST00000315776 282 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 LINC01823-204ENST00000438722 794 ntTSL 3 BASIC15.41■□□□□ 0.06
COL6A3P12111 RN7SL87P-201ENST00000497657 288 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 AC004066.1-201ENST00000502488 802 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 AL591424.3-201ENST00000614278 872 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 Metazoa_SRP.157-201ENST00000622819 262 ntBASIC15.41■□□□□ 0.06
COL6A3P12111 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC15.41■□□□□ 0.06
COL6A3P12111 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 FCRL6-202ENST00000339348 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
COL6A3P12111 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC15.41■□□□□ 0.06
COL6A3P12111 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
COL6A3P12111 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
COL6A3P12111 S100A7A-202ENST00000368728 440 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
COL6A3P12111 SPTLC1P3-201ENST00000403408 259 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 AC026884.1-201ENST00000418296 457 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 EIF2B5-202ENST00000432569 984 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A3P12111 TPT1P11-201ENST00000458482 498 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 RN7SL147P-201ENST00000487345 298 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 STAT5A-208ENST00000587646 1022 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 MIAT_exon5_3.1-201ENST00000613656 377 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC15.4■□□□□ 0.06
COL6A3P12111 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
COL6A3P12111 AHCYP4-201ENST00000419201 1315 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
COL6A3P12111 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
COL6A3P12111 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 ADARB2-AS1-201ENST00000381301 625 ntTSL 2 BASIC15.4■□□□□ 0.06
COL6A3P12111 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 RGS5-216ENST00000449680 788 ntTSL 3 BASIC15.4■□□□□ 0.06
COL6A3P12111 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
COL6A3P12111 MIR2278-201ENST00000516344 96 ntBASIC15.4■□□□□ 0.06
COL6A3P12111 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.4■□□□□ 0.06
COL6A3P12111 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC15.4■□□□□ 0.06
COL6A3P12111 AC007250.1-201ENST00000608934 338 ntBASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms