Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
MSH4O15457 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
MSH4O15457 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
MSH4O15457 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 AGAP7P-201ENST00000582299 2062 ntBASIC17.11■□□□□ 0.33
MSH4O15457 AGAP14-201ENST00000624701 2060 ntBASIC17.11■□□□□ 0.33
MSH4O15457 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.11■□□□□ 0.33
MSH4O15457 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
MSH4O15457 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
MSH4O15457 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC17.11■□□□□ 0.33
MSH4O15457 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 AC006001.1-201ENST00000325130 474 ntBASIC17.11■□□□□ 0.33
MSH4O15457 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 AC099336.1-201ENST00000417053 1171 ntBASIC17.11■□□□□ 0.33
MSH4O15457 POM121L8P-201ENST00000417732 1281 ntBASIC17.11■□□□□ 0.33
MSH4O15457 AC026954.1-201ENST00000429771 1293 ntBASIC17.11■□□□□ 0.33
MSH4O15457 POM121L9P-203ENST00000441984 1285 ntBASIC17.11■□□□□ 0.33
MSH4O15457 KRT223P-202ENST00000449164 1292 ntBASIC17.11■□□□□ 0.33
MSH4O15457 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 AL359881.2-201ENST00000602973 570 ntBASIC17.11■□□□□ 0.33
MSH4O15457 AC133552.6-201ENST00000613406 534 ntBASIC17.11■□□□□ 0.33
MSH4O15457 RHOXF1P1-202ENST00000635473 501 ntBASIC17.11■□□□□ 0.33
MSH4O15457 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
MSH4O15457 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
MSH4O15457 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 ZBED1P1-201ENST00000502364 1930 ntBASIC17.11■□□□□ 0.33
MSH4O15457 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 ACE3P-201ENST00000423435 1973 ntBASIC17.11■□□□□ 0.33
MSH4O15457 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
MSH4O15457 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
MSH4O15457 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
MSH4O15457 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
MSH4O15457 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
MSH4O15457 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
MSH4O15457 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
MSH4O15457 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
MSH4O15457 AC245100.3-201ENST00000441281 285 ntBASIC17.1■□□□□ 0.33
MSH4O15457 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH4O15457 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH4O15457 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC17.1■□□□□ 0.33
MSH4O15457 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.1■□□□□ 0.33
MSH4O15457 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC17.1■□□□□ 0.33
MSH4O15457 AC138951.2-201ENST00000623455 1161 ntBASIC17.1■□□□□ 0.33
MSH4O15457 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC17.1■□□□□ 0.33
MSH4O15457 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC17.1■□□□□ 0.33
MSH4O15457 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
MSH4O15457 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
MSH4O15457 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
MSH4O15457 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC17.09■□□□□ 0.33
MSH4O15457 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
MSH4O15457 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
MSH4O15457 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms