Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC30.46■■■□□ 2.47
SHANK3Q9BYB0 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC30.46■■■□□ 2.47
SHANK3Q9BYB0 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
SHANK3Q9BYB0 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
SHANK3Q9BYB0 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC30.45■■■□□ 2.47
SHANK3Q9BYB0 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC30.45■■■□□ 2.47
SHANK3Q9BYB0 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SHANK3Q9BYB0 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SHANK3Q9BYB0 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
SHANK3Q9BYB0 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC30.44■■■□□ 2.46
SHANK3Q9BYB0 AC005703.6-201ENST00000623265 1329 ntBASIC30.43■■■□□ 2.46
SHANK3Q9BYB0 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC30.43■■■□□ 2.46
SHANK3Q9BYB0 SERBP1P1-201ENST00000396021 1160 ntBASIC30.43■■■□□ 2.46
SHANK3Q9BYB0 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
SHANK3Q9BYB0 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC30.43■■■□□ 2.46
SHANK3Q9BYB0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC30.43■■■□□ 2.46
SHANK3Q9BYB0 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC30.43■■■□□ 2.46
SHANK3Q9BYB0 DUX4L19-201ENST00000557448 1267 ntBASIC30.42■■■□□ 2.46
SHANK3Q9BYB0 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC30.42■■■□□ 2.46
SHANK3Q9BYB0 MAG-206ENST00000597035 542 ntTSL 4 BASIC30.42■■■□□ 2.46
SHANK3Q9BYB0 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC30.42■■■□□ 2.46
SHANK3Q9BYB0 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC30.42■■■□□ 2.46
SHANK3Q9BYB0 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC30.42■■■□□ 2.46
SHANK3Q9BYB0 MIR6821-201ENST00000617625 74 ntBASIC30.42■■■□□ 2.46
SHANK3Q9BYB0 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
SHANK3Q9BYB0 STOX2-205ENST00000513034 807 ntTSL 3 BASIC30.41■■■□□ 2.46
SHANK3Q9BYB0 ANKRD20A6P-201ENST00000618763 204 ntBASIC30.41■■■□□ 2.46
SHANK3Q9BYB0 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC30.41■■■□□ 2.46
SHANK3Q9BYB0 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC30.4■■■□□ 2.46
SHANK3Q9BYB0 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC30.4■■■□□ 2.46
SHANK3Q9BYB0 AC097381.1-201ENST00000429019 1296 ntBASIC30.4■■■□□ 2.46
SHANK3Q9BYB0 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC30.4■■■□□ 2.46
SHANK3Q9BYB0 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC30.4■■■□□ 2.46
SHANK3Q9BYB0 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
SHANK3Q9BYB0 AC087623.3-201ENST00000607047 1098 ntBASIC30.39■■■□□ 2.46
SHANK3Q9BYB0 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SHANK3Q9BYB0 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.46
SHANK3Q9BYB0 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC30.39■■■□□ 2.46
SHANK3Q9BYB0 HYI-206ENST00000372434 1025 ntTSL 5 BASIC30.39■■■□□ 2.45
SHANK3Q9BYB0 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC30.39■■■□□ 2.45
SHANK3Q9BYB0 AC091305.1-201ENST00000479476 895 ntBASIC30.39■■■□□ 2.45
SHANK3Q9BYB0 AC011298.3-201ENST00000615796 283 ntBASIC30.39■■■□□ 2.45
SHANK3Q9BYB0 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC30.38■■■□□ 2.45
SHANK3Q9BYB0 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC30.38■■■□□ 2.45
SHANK3Q9BYB0 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC30.37■■■□□ 2.45
SHANK3Q9BYB0 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC30.37■■■□□ 2.45
SHANK3Q9BYB0 CA15P2-201ENST00000611168 834 ntBASIC30.37■■■□□ 2.45
SHANK3Q9BYB0 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC30.37■■■□□ 2.45
SHANK3Q9BYB0 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 PLD4-205ENST00000553861 667 ntTSL 2 BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 AC027682.1-201ENST00000562846 899 ntBASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
SHANK3Q9BYB0 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHANK3Q9BYB0 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC30.35■■■□□ 2.45
SHANK3Q9BYB0 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHANK3Q9BYB0 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC30.35■■■□□ 2.45
SHANK3Q9BYB0 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHANK3Q9BYB0 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC30.35■■■□□ 2.45
SHANK3Q9BYB0 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC30.35■■■□□ 2.45
SHANK3Q9BYB0 C17orf82-201ENST00000623772 1530 ntBASIC30.35■■■□□ 2.45
SHANK3Q9BYB0 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
SHANK3Q9BYB0 MIR6089-201ENST00000616698 64 ntBASIC30.34■■■□□ 2.45
SHANK3Q9BYB0 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHANK3Q9BYB0 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
SHANK3Q9BYB0 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 RASA4CP-201ENST00000424092 1398 ntBASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC30.33■■■□□ 2.45
SHANK3Q9BYB0 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SHANK3Q9BYB0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHANK3Q9BYB0 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
SHANK3Q9BYB0 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC30.32■■■□□ 2.44
SHANK3Q9BYB0 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
SHANK3Q9BYB0 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SHANK3Q9BYB0 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
SHANK3Q9BYB0 AL162430.1-201ENST00000480705 870 ntBASIC30.31■■■□□ 2.44
SHANK3Q9BYB0 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
SHANK3Q9BYB0 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
SHANK3Q9BYB0 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHANK3Q9BYB0 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
SHANK3Q9BYB0 SYT6-210ENST00000641643 1587 ntBASIC30.3■■■□□ 2.44
SHANK3Q9BYB0 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC30.3■■■□□ 2.44
SHANK3Q9BYB0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms