Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC25.28■■□□□ 1.64
LRCH3Q96II8 GXYLT1P5-201ENST00000614548 1189 ntBASIC25.28■■□□□ 1.64
LRCH3Q96II8 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC25.28■■□□□ 1.64
LRCH3Q96II8 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
LRCH3Q96II8 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
LRCH3Q96II8 AC011298.3-201ENST00000615796 283 ntBASIC25.27■■□□□ 1.64
LRCH3Q96II8 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.27■■□□□ 1.64
LRCH3Q96II8 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC25.27■■□□□ 1.64
LRCH3Q96II8 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
LRCH3Q96II8 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
LRCH3Q96II8 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC25.27■■□□□ 1.64
LRCH3Q96II8 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC25.27■■□□□ 1.64
LRCH3Q96II8 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
LRCH3Q96II8 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.26■■□□□ 1.63
LRCH3Q96II8 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
LRCH3Q96II8 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC25.26■■□□□ 1.63
LRCH3Q96II8 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
LRCH3Q96II8 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC25.26■■□□□ 1.63
LRCH3Q96II8 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
LRCH3Q96II8 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC25.25■■□□□ 1.63
LRCH3Q96II8 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC25.25■■□□□ 1.63
LRCH3Q96II8 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC25.25■■□□□ 1.63
LRCH3Q96II8 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
LRCH3Q96II8 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC25.24■■□□□ 1.63
LRCH3Q96II8 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
LRCH3Q96II8 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
LRCH3Q96II8 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC25.24■■□□□ 1.63
LRCH3Q96II8 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC25.24■■□□□ 1.63
LRCH3Q96II8 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.24■■□□□ 1.63
LRCH3Q96II8 GRAMD4P2-201ENST00000423297 1097 ntBASIC25.23■■□□□ 1.63
LRCH3Q96II8 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC25.23■■□□□ 1.63
LRCH3Q96II8 AC099791.2-201ENST00000605725 427 ntBASIC25.23■■□□□ 1.63
LRCH3Q96II8 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC25.22■■□□□ 1.63
LRCH3Q96II8 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
LRCH3Q96II8 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC25.22■■□□□ 1.63
LRCH3Q96II8 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC25.22■■□□□ 1.63
LRCH3Q96II8 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC25.22■■□□□ 1.63
LRCH3Q96II8 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC25.22■■□□□ 1.63
LRCH3Q96II8 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
LRCH3Q96II8 AL139393.2-201ENST00000608721 2025 ntBASIC25.22■■□□□ 1.63
LRCH3Q96II8 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
LRCH3Q96II8 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC25.21■■□□□ 1.63
LRCH3Q96II8 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
LRCH3Q96II8 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
LRCH3Q96II8 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC25.2■■□□□ 1.63
LRCH3Q96II8 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
LRCH3Q96II8 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
LRCH3Q96II8 ME3-201ENST00000323418 1068 ntTSL 5 BASIC25.2■■□□□ 1.62
LRCH3Q96II8 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC25.2■■□□□ 1.62
LRCH3Q96II8 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC25.2■■□□□ 1.62
LRCH3Q96II8 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC25.2■■□□□ 1.62
LRCH3Q96II8 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC25.2■■□□□ 1.62
LRCH3Q96II8 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
LRCH3Q96II8 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
LRCH3Q96II8 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
LRCH3Q96II8 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC25.19■■□□□ 1.62
LRCH3Q96II8 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
LRCH3Q96II8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
LRCH3Q96II8 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
LRCH3Q96II8 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.19■■□□□ 1.62
LRCH3Q96II8 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.19■■□□□ 1.62
LRCH3Q96II8 AC142086.6-201ENST00000621154 1765 ntBASIC25.18■■□□□ 1.62
LRCH3Q96II8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
LRCH3Q96II8 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC25.18■■□□□ 1.62
LRCH3Q96II8 AL138724.1-201ENST00000606771 1088 ntBASIC25.18■■□□□ 1.62
LRCH3Q96II8 AC245100.8-202ENST00000629247 1058 ntBASIC25.18■■□□□ 1.62
LRCH3Q96II8 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC25.18■■□□□ 1.62
LRCH3Q96II8 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC25.18■■□□□ 1.62
LRCH3Q96II8 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
LRCH3Q96II8 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.18■■□□□ 1.62
LRCH3Q96II8 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
LRCH3Q96II8 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC25.17■■□□□ 1.62
LRCH3Q96II8 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
LRCH3Q96II8 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
LRCH3Q96II8 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.17■■□□□ 1.62
LRCH3Q96II8 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
LRCH3Q96II8 NTF6G-201ENST00000591094 616 ntBASIC25.17■■□□□ 1.62
LRCH3Q96II8 AC233992.3-201ENST00000607491 485 ntBASIC25.17■■□□□ 1.62
LRCH3Q96II8 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.17■■□□□ 1.62
LRCH3Q96II8 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC25.17■■□□□ 1.62
LRCH3Q96II8 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
LRCH3Q96II8 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC25.16■■□□□ 1.62
LRCH3Q96II8 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC25.16■■□□□ 1.62
LRCH3Q96II8 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
LRCH3Q96II8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
LRCH3Q96II8 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
LRCH3Q96II8 AC104771.1-201ENST00000603335 964 ntBASIC25.15■■□□□ 1.62
LRCH3Q96II8 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC25.15■■□□□ 1.62
LRCH3Q96II8 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
LRCH3Q96II8 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
LRCH3Q96II8 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC25.14■■□□□ 1.62
LRCH3Q96II8 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
LRCH3Q96II8 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC25.14■■□□□ 1.61
LRCH3Q96II8 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC25.14■■□□□ 1.61
LRCH3Q96II8 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC25.14■■□□□ 1.61
LRCH3Q96II8 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
LRCH3Q96II8 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.14■■□□□ 1.61
LRCH3Q96II8 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
LRCH3Q96II8 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC25.13■■□□□ 1.61
LRCH3Q96II8 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms