Protein–RNA interactions for Protein: Q92541

RTF1, RNA polymerase-associated protein RTF1 homolog, humanhuman

Known RBP Predictions only

Length 710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1Q92541 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC30.29■■■□□ 2.44
RTF1Q92541 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
RTF1Q92541 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
RTF1Q92541 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC30.28■■■□□ 2.44
RTF1Q92541 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC30.28■■■□□ 2.44
RTF1Q92541 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC30.28■■■□□ 2.44
RTF1Q92541 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC30.28■■■□□ 2.44
RTF1Q92541 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC30.28■■■□□ 2.44
RTF1Q92541 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
RTF1Q92541 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
RTF1Q92541 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
RTF1Q92541 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
RTF1Q92541 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
RTF1Q92541 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.27■■■□□ 2.44
RTF1Q92541 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC30.27■■■□□ 2.44
RTF1Q92541 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC30.27■■■□□ 2.44
RTF1Q92541 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.27■■■□□ 2.44
RTF1Q92541 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC30.27■■■□□ 2.44
RTF1Q92541 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.27■■■□□ 2.44
RTF1Q92541 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
RTF1Q92541 AC131274.2-201ENST00000580697 1507 ntBASIC30.27■■■□□ 2.44
RTF1Q92541 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
RTF1Q92541 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC30.26■■■□□ 2.44
RTF1Q92541 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC30.26■■■□□ 2.43
RTF1Q92541 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC30.26■■■□□ 2.43
RTF1Q92541 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC30.26■■■□□ 2.43
RTF1Q92541 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
RTF1Q92541 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.25■■■□□ 2.43
RTF1Q92541 STK32C-205ENST00000456004 607 ntTSL 2 BASIC30.25■■■□□ 2.43
RTF1Q92541 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
RTF1Q92541 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC30.25■■■□□ 2.43
RTF1Q92541 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.25■■■□□ 2.43
RTF1Q92541 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
RTF1Q92541 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
RTF1Q92541 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
RTF1Q92541 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
RTF1Q92541 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
RTF1Q92541 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
RTF1Q92541 AL136116.3-201ENST00000402907 1138 ntBASIC30.24■■■□□ 2.43
RTF1Q92541 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
RTF1Q92541 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
RTF1Q92541 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC30.24■■■□□ 2.43
RTF1Q92541 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
RTF1Q92541 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC30.24■■■□□ 2.43
RTF1Q92541 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
RTF1Q92541 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
RTF1Q92541 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC30.23■■■□□ 2.43
RTF1Q92541 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
RTF1Q92541 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
RTF1Q92541 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
RTF1Q92541 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC30.22■■■□□ 2.43
RTF1Q92541 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
RTF1Q92541 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
RTF1Q92541 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
RTF1Q92541 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
RTF1Q92541 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC30.21■■■□□ 2.43
RTF1Q92541 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.21■■■□□ 2.43
RTF1Q92541 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
RTF1Q92541 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
RTF1Q92541 AL022069.1-201ENST00000568025 1636 ntBASIC30.21■■■□□ 2.43
RTF1Q92541 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
RTF1Q92541 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
RTF1Q92541 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
RTF1Q92541 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC30.2■■■□□ 2.43
RTF1Q92541 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
RTF1Q92541 AC022211.4-201ENST00000625094 2161 ntBASIC30.2■■■□□ 2.43
RTF1Q92541 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC30.2■■■□□ 2.43
RTF1Q92541 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC30.2■■■□□ 2.43
RTF1Q92541 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
RTF1Q92541 MIR4466-201ENST00000606121 54 ntBASIC30.2■■■□□ 2.43
RTF1Q92541 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30.2■■■□□ 2.42
RTF1Q92541 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC30.2■■■□□ 2.42
RTF1Q92541 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
RTF1Q92541 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC30.19■■■□□ 2.42
RTF1Q92541 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.19■■■□□ 2.42
RTF1Q92541 AL512631.2-201ENST00000604634 923 ntBASIC30.19■■■□□ 2.42
RTF1Q92541 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
RTF1Q92541 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
RTF1Q92541 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
RTF1Q92541 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
RTF1Q92541 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
RTF1Q92541 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
RTF1Q92541 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
RTF1Q92541 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RTF1Q92541 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC30.18■■■□□ 2.42
RTF1Q92541 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RTF1Q92541 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
RTF1Q92541 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RTF1Q92541 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC30.18■■■□□ 2.42
RTF1Q92541 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC30.18■■■□□ 2.42
RTF1Q92541 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
RTF1Q92541 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RTF1Q92541 RASSF1-AS1-201ENST00000629828 790 ntBASIC30.17■■■□□ 2.42
RTF1Q92541 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RTF1Q92541 AC005703.6-201ENST00000623265 1329 ntBASIC30.17■■■□□ 2.42
RTF1Q92541 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RTF1Q92541 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
RTF1Q92541 HLA-L-211ENST00000482052 1765 ntBASIC30.16■■■□□ 2.42
RTF1Q92541 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
RTF1Q92541 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms