Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.88■■□□□ 1.41
SLC44A3Q8N4M1 AC142086.6-201ENST00000621154 1765 ntBASIC23.88■■□□□ 1.41
SLC44A3Q8N4M1 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SLC44A3Q8N4M1 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.87■■□□□ 1.41
SLC44A3Q8N4M1 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.87■■□□□ 1.41
SLC44A3Q8N4M1 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SLC44A3Q8N4M1 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC23.87■■□□□ 1.41
SLC44A3Q8N4M1 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC23.87■■□□□ 1.41
SLC44A3Q8N4M1 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SLC44A3Q8N4M1 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 AC096887.2-201ENST00000623443 1957 ntBASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 AC027682.1-201ENST00000562846 899 ntBASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 REST-206ENST00000612429 1376 ntTSL 5 BASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 REST-207ENST00000616975 1370 ntTSL 5 BASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC23.86■■□□□ 1.41
SLC44A3Q8N4M1 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 IRS3P-201ENST00000223076 1006 ntBASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 AC008764.7-201ENST00000593779 1081 ntBASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 AC099791.2-201ENST00000605725 427 ntBASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
SLC44A3Q8N4M1 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC23.84■■□□□ 1.41
SLC44A3Q8N4M1 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
SLC44A3Q8N4M1 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SLC44A3Q8N4M1 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SLC44A3Q8N4M1 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC23.82■■□□□ 1.4
SLC44A3Q8N4M1 AC011298.3-201ENST00000615796 283 ntBASIC23.82■■□□□ 1.4
SLC44A3Q8N4M1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC23.82■■□□□ 1.4
SLC44A3Q8N4M1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC23.82■■□□□ 1.4
SLC44A3Q8N4M1 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
SLC44A3Q8N4M1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 AL138724.1-201ENST00000606771 1088 ntBASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SLC44A3Q8N4M1 ERN1-208ENST00000606895 2068 ntBASIC23.8■■□□□ 1.4
SLC44A3Q8N4M1 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC23.8■■□□□ 1.4
SLC44A3Q8N4M1 JTB-203ENST00000368589 1216 ntTSL 2 BASIC23.8■■□□□ 1.4
SLC44A3Q8N4M1 AC099791.1-201ENST00000416440 715 ntBASIC23.8■■□□□ 1.4
SLC44A3Q8N4M1 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC23.8■■□□□ 1.4
SLC44A3Q8N4M1 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SLC44A3Q8N4M1 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC23.8■■□□□ 1.4
SLC44A3Q8N4M1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC23.79■■□□□ 1.4
SLC44A3Q8N4M1 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.79■■□□□ 1.4
SLC44A3Q8N4M1 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC44A3Q8N4M1 RHOF-204ENST00000537265 699 ntTSL 2 BASIC23.79■■□□□ 1.4
SLC44A3Q8N4M1 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC23.79■■□□□ 1.4
SLC44A3Q8N4M1 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC44A3Q8N4M1 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC44A3Q8N4M1 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SLC44A3Q8N4M1 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC23.78■■□□□ 1.4
SLC44A3Q8N4M1 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
SLC44A3Q8N4M1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SLC44A3Q8N4M1 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
SLC44A3Q8N4M1 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC23.77■■□□□ 1.4
SLC44A3Q8N4M1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SLC44A3Q8N4M1 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms