Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
CCDC88AQ3V6T2 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC88AQ3V6T2 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC88AQ3V6T2 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC88AQ3V6T2 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC28.68■■■□□ 2.18
CCDC88AQ3V6T2 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CCDC88AQ3V6T2 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC28.68■■■□□ 2.18
CCDC88AQ3V6T2 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
CCDC88AQ3V6T2 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC28.68■■■□□ 2.18
CCDC88AQ3V6T2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
CCDC88AQ3V6T2 AC010501.1-201ENST00000606270 1962 ntBASIC28.67■■■□□ 2.18
CCDC88AQ3V6T2 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
CCDC88AQ3V6T2 AC091305.1-201ENST00000479476 895 ntBASIC28.67■■■□□ 2.18
CCDC88AQ3V6T2 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC28.67■■■□□ 2.18
CCDC88AQ3V6T2 MIR4767-201ENST00000582827 78 ntBASIC28.66■■■□□ 2.18
CCDC88AQ3V6T2 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC28.66■■■□□ 2.18
CCDC88AQ3V6T2 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
CCDC88AQ3V6T2 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC28.65■■■□□ 2.18
CCDC88AQ3V6T2 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC28.65■■■□□ 2.18
CCDC88AQ3V6T2 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
CCDC88AQ3V6T2 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
CCDC88AQ3V6T2 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC28.65■■■□□ 2.18
CCDC88AQ3V6T2 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
CCDC88AQ3V6T2 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC88AQ3V6T2 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
CCDC88AQ3V6T2 AC004448.1-201ENST00000458332 883 ntBASIC28.63■■■□□ 2.17
CCDC88AQ3V6T2 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
CCDC88AQ3V6T2 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC28.63■■■□□ 2.17
CCDC88AQ3V6T2 IRS3P-201ENST00000223076 1006 ntBASIC28.63■■■□□ 2.17
CCDC88AQ3V6T2 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CCDC88AQ3V6T2 AC092803.2-201ENST00000564287 1899 ntBASIC28.62■■■□□ 2.17
CCDC88AQ3V6T2 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
CCDC88AQ3V6T2 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC28.62■■■□□ 2.17
CCDC88AQ3V6T2 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CCDC88AQ3V6T2 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC28.62■■■□□ 2.17
CCDC88AQ3V6T2 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
CCDC88AQ3V6T2 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 KRT18P5-201ENST00000436075 1291 ntBASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC28.61■■■□□ 2.17
CCDC88AQ3V6T2 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CCDC88AQ3V6T2 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC28.6■■■□□ 2.17
CCDC88AQ3V6T2 GLI3-203ENST00000437480 451 ntTSL 2 BASIC28.6■■■□□ 2.17
CCDC88AQ3V6T2 AC027682.1-201ENST00000562846 899 ntBASIC28.6■■■□□ 2.17
CCDC88AQ3V6T2 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 FOXO3B-201ENST00000395675 1928 ntBASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 AC097639.1-201ENST00000565519 1891 ntBASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 SERBP1P1-201ENST00000396021 1160 ntBASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 AC099791.1-201ENST00000416440 715 ntBASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
CCDC88AQ3V6T2 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC88AQ3V6T2 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
CCDC88AQ3V6T2 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC28.58■■■□□ 2.17
CCDC88AQ3V6T2 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC28.58■■■□□ 2.17
CCDC88AQ3V6T2 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC88AQ3V6T2 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC28.58■■■□□ 2.17
CCDC88AQ3V6T2 SYT6-210ENST00000641643 1587 ntBASIC28.58■■■□□ 2.16
CCDC88AQ3V6T2 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CCDC88AQ3V6T2 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CCDC88AQ3V6T2 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC28.56■■■□□ 2.16
CCDC88AQ3V6T2 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CCDC88AQ3V6T2 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
CCDC88AQ3V6T2 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC28.56■■■□□ 2.16
CCDC88AQ3V6T2 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC28.56■■■□□ 2.16
CCDC88AQ3V6T2 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC28.55■■■□□ 2.16
CCDC88AQ3V6T2 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC28.55■■■□□ 2.16
CCDC88AQ3V6T2 AC011298.3-201ENST00000615796 283 ntBASIC28.55■■■□□ 2.16
CCDC88AQ3V6T2 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC28.55■■■□□ 2.16
CCDC88AQ3V6T2 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
CCDC88AQ3V6T2 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
CCDC88AQ3V6T2 AC008764.7-201ENST00000593779 1081 ntBASIC28.55■■■□□ 2.16
CCDC88AQ3V6T2 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC28.55■■■□□ 2.16
CCDC88AQ3V6T2 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC28.54■■■□□ 2.16
CCDC88AQ3V6T2 DENND3-207ENST00000518347 850 ntTSL 2 BASIC28.54■■■□□ 2.16
CCDC88AQ3V6T2 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC28.54■■■□□ 2.16
CCDC88AQ3V6T2 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC28.54■■■□□ 2.16
CCDC88AQ3V6T2 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC28.54■■■□□ 2.16
CCDC88AQ3V6T2 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC28.54■■■□□ 2.16
CCDC88AQ3V6T2 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC28.54■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms