Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.43■■□□□ 1.02
RNF4P78317 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC21.43■■□□□ 1.02
RNF4P78317 CLTA-210ENST00000540080 989 ntTSL 2 BASIC21.43■■□□□ 1.02
RNF4P78317 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
RNF4P78317 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
RNF4P78317 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNF4P78317 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNF4P78317 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNF4P78317 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNF4P78317 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNF4P78317 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
RNF4P78317 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
RNF4P78317 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.42■■□□□ 1.02
RNF4P78317 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
RNF4P78317 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC21.42■■□□□ 1.02
RNF4P78317 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RNF4P78317 SNX5-217ENST00000606557 1087 ntBASIC21.42■■□□□ 1.02
RNF4P78317 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.42■■□□□ 1.02
RNF4P78317 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
RNF4P78317 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.42■■□□□ 1.02
RNF4P78317 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.42■■□□□ 1.02
RNF4P78317 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNF4P78317 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.41■■□□□ 1.02
RNF4P78317 AL356441.2-201ENST00000443009 864 ntBASIC21.41■■□□□ 1.02
RNF4P78317 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.41■■□□□ 1.02
RNF4P78317 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
RNF4P78317 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC21.41■■□□□ 1.02
RNF4P78317 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.4■■□□□ 1.02
RNF4P78317 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF4P78317 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.4■■□□□ 1.02
RNF4P78317 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.4■■□□□ 1.02
RNF4P78317 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF4P78317 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.4■■□□□ 1.02
RNF4P78317 KRT16P3-201ENST00000439127 1283 ntBASIC21.4■■□□□ 1.02
RNF4P78317 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.4■■□□□ 1.02
RNF4P78317 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.4■■□□□ 1.02
RNF4P78317 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
RNF4P78317 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC21.4■■□□□ 1.02
RNF4P78317 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.02
RNF4P78317 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RNF4P78317 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
RNF4P78317 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.02
RNF4P78317 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.39■■□□□ 1.01
RNF4P78317 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNF4P78317 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.39■■□□□ 1.01
RNF4P78317 MTDHP2-201ENST00000601468 714 ntBASIC21.39■■□□□ 1.01
RNF4P78317 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.39■■□□□ 1.01
RNF4P78317 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
RNF4P78317 AC131274.2-201ENST00000580697 1507 ntBASIC21.39■■□□□ 1.01
RNF4P78317 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNF4P78317 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
RNF4P78317 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC21.38■■□□□ 1.01
RNF4P78317 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF4P78317 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF4P78317 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF4P78317 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.38■■□□□ 1.01
RNF4P78317 AC004448.1-201ENST00000458332 883 ntBASIC21.38■■□□□ 1.01
RNF4P78317 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
RNF4P78317 AC010997.5-201ENST00000609182 354 ntBASIC21.38■■□□□ 1.01
RNF4P78317 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF4P78317 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF4P78317 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF4P78317 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
RNF4P78317 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
RNF4P78317 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF4P78317 STK32C-205ENST00000456004 607 ntTSL 2 BASIC21.37■■□□□ 1.01
RNF4P78317 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC21.37■■□□□ 1.01
RNF4P78317 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
RNF4P78317 AL022069.1-201ENST00000568025 1636 ntBASIC21.37■■□□□ 1.01
RNF4P78317 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF4P78317 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
RNF4P78317 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF4P78317 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC21.36■■□□□ 1.01
RNF4P78317 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.36■■□□□ 1.01
RNF4P78317 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF4P78317 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
RNF4P78317 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF4P78317 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
RNF4P78317 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RNF4P78317 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
RNF4P78317 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
RNF4P78317 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.35■■□□□ 1.01
RNF4P78317 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.35■■□□□ 1.01
RNF4P78317 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF4P78317 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF4P78317 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF4P78317 MIR6722-201ENST00000617286 78 ntBASIC21.34■■□□□ 1.01
RNF4P78317 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.34■■□□□ 1.01
RNF4P78317 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.34■■□□□ 1.01
RNF4P78317 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
RNF4P78317 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.34■■□□□ 1.01
RNF4P78317 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC21.34■■□□□ 1.01
RNF4P78317 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
RNF4P78317 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.34■■□□□ 1.01
RNF4P78317 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
RNF4P78317 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
RNF4P78317 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.33■■□□□ 1.01
RNF4P78317 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
RNF4P78317 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
RNF4P78317 TMEM202-AS1-202ENST00000565181 2325 ntBASIC21.33■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms