Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM3P62310 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM3P62310 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LSM3P62310 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.78■□□□□ 0.92
LSM3P62310 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LSM3P62310 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM3P62310 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LSM3P62310 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LSM3P62310 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LSM3P62310 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
LSM3P62310 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC20.77■□□□□ 0.92
LSM3P62310 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LSM3P62310 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
LSM3P62310 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LSM3P62310 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LSM3P62310 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
LSM3P62310 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC20.76■□□□□ 0.91
LSM3P62310 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LSM3P62310 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
LSM3P62310 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM3P62310 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC20.76■□□□□ 0.91
LSM3P62310 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM3P62310 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LSM3P62310 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM3P62310 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
LSM3P62310 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
LSM3P62310 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
LSM3P62310 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.76■□□□□ 0.91
LSM3P62310 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.76■□□□□ 0.91
LSM3P62310 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM3P62310 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM3P62310 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM3P62310 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.76■□□□□ 0.91
LSM3P62310 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM3P62310 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LSM3P62310 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC20.75■□□□□ 0.91
LSM3P62310 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM3P62310 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC20.75■□□□□ 0.91
LSM3P62310 SUZ12P1-203ENST00000578195 985 ntBASIC20.75■□□□□ 0.91
LSM3P62310 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM3P62310 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LSM3P62310 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM3P62310 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LSM3P62310 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM3P62310 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LSM3P62310 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LSM3P62310 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.74■□□□□ 0.91
LSM3P62310 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM3P62310 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM3P62310 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM3P62310 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC20.74■□□□□ 0.91
LSM3P62310 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
LSM3P62310 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
LSM3P62310 GUSBP5-202ENST00000510805 1989 ntBASIC20.74■□□□□ 0.91
LSM3P62310 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
LSM3P62310 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC20.73■□□□□ 0.91
LSM3P62310 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
LSM3P62310 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 HLA-L-211ENST00000482052 1765 ntBASIC20.73■□□□□ 0.91
LSM3P62310 AL137060.1-201ENST00000618151 2648 ntBASIC20.73■□□□□ 0.91
LSM3P62310 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.73■□□□□ 0.91
LSM3P62310 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.73■□□□□ 0.91
LSM3P62310 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
LSM3P62310 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.73■□□□□ 0.91
LSM3P62310 AC137767.1-201ENST00000602918 1920 ntBASIC20.72■□□□□ 0.91
LSM3P62310 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LSM3P62310 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LSM3P62310 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LSM3P62310 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LSM3P62310 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LSM3P62310 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LSM3P62310 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC20.72■□□□□ 0.91
LSM3P62310 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.72■□□□□ 0.91
LSM3P62310 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
LSM3P62310 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
LSM3P62310 HNRNPLP2-201ENST00000568980 1570 ntBASIC20.72■□□□□ 0.91
LSM3P62310 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
LSM3P62310 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.71■□□□□ 0.91
LSM3P62310 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
LSM3P62310 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LSM3P62310 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
LSM3P62310 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
LSM3P62310 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
LSM3P62310 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
LSM3P62310 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
LSM3P62310 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
LSM3P62310 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.7■□□□□ 0.91
LSM3P62310 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.7■□□□□ 0.9
LSM3P62310 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LSM3P62310 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LSM3P62310 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
LSM3P62310 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
LSM3P62310 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms