Protein–RNA interactions for Protein: P02708

CHRNA1, Acetylcholine receptor subunit alpha, humanhuman

Predictions only

Length 482 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA1P02708 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC25.4■■□□□ 1.66
CHRNA1P02708 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CHRNA1P02708 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CHRNA1P02708 ZNRF2P3-201ENST00000424200 374 ntBASIC25.4■■□□□ 1.66
CHRNA1P02708 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CHRNA1P02708 SUDS3P1-201ENST00000505831 966 ntBASIC25.4■■□□□ 1.66
CHRNA1P02708 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC25.4■■□□□ 1.66
CHRNA1P02708 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC25.4■■□□□ 1.66
CHRNA1P02708 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.4■■□□□ 1.66
CHRNA1P02708 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CHRNA1P02708 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.39■■□□□ 1.66
CHRNA1P02708 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.39■■□□□ 1.66
CHRNA1P02708 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
CHRNA1P02708 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC25.39■■□□□ 1.66
CHRNA1P02708 AC142381.2-201ENST00000566120 298 ntBASIC25.39■■□□□ 1.66
CHRNA1P02708 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
CHRNA1P02708 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.65
CHRNA1P02708 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC25.39■■□□□ 1.65
CHRNA1P02708 AC135279.3-201ENST00000610945 1311 ntBASIC25.38■■□□□ 1.65
CHRNA1P02708 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
CHRNA1P02708 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CHRNA1P02708 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC25.38■■□□□ 1.65
CHRNA1P02708 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
CHRNA1P02708 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC25.38■■□□□ 1.65
CHRNA1P02708 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC25.37■■□□□ 1.65
CHRNA1P02708 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
CHRNA1P02708 AC024257.2-201ENST00000549699 147 ntBASIC25.37■■□□□ 1.65
CHRNA1P02708 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.37■■□□□ 1.65
CHRNA1P02708 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CHRNA1P02708 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CHRNA1P02708 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC25.36■■□□□ 1.65
CHRNA1P02708 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
CHRNA1P02708 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC25.36■■□□□ 1.65
CHRNA1P02708 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CHRNA1P02708 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
CHRNA1P02708 DUSP8P4-201ENST00000399538 1761 ntBASIC25.36■■□□□ 1.65
CHRNA1P02708 REST-206ENST00000612429 1376 ntTSL 5 BASIC25.35■■□□□ 1.65
CHRNA1P02708 REST-207ENST00000616975 1370 ntTSL 5 BASIC25.35■■□□□ 1.65
CHRNA1P02708 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CHRNA1P02708 GUK1-205ENST00000366722 850 ntTSL 3 BASIC25.35■■□□□ 1.65
CHRNA1P02708 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC25.35■■□□□ 1.65
CHRNA1P02708 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CHRNA1P02708 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
CHRNA1P02708 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC25.35■■□□□ 1.65
CHRNA1P02708 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC25.35■■□□□ 1.65
CHRNA1P02708 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC25.34■■□□□ 1.65
CHRNA1P02708 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC25.34■■□□□ 1.65
CHRNA1P02708 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
CHRNA1P02708 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CHRNA1P02708 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC25.34■■□□□ 1.65
CHRNA1P02708 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CHRNA1P02708 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
CHRNA1P02708 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.33■■□□□ 1.65
CHRNA1P02708 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
CHRNA1P02708 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.33■■□□□ 1.65
CHRNA1P02708 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CHRNA1P02708 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CHRNA1P02708 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC25.32■■□□□ 1.64
CHRNA1P02708 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC25.32■■□□□ 1.64
CHRNA1P02708 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
CHRNA1P02708 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC25.31■■□□□ 1.64
CHRNA1P02708 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
CHRNA1P02708 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
CHRNA1P02708 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC25.31■■□□□ 1.64
CHRNA1P02708 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
CHRNA1P02708 EDA-201ENST00000338901 1233 ntBASIC25.31■■□□□ 1.64
CHRNA1P02708 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
CHRNA1P02708 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
CHRNA1P02708 MIR6089-201ENST00000616698 64 ntBASIC25.31■■□□□ 1.64
CHRNA1P02708 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC25.31■■□□□ 1.64
CHRNA1P02708 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC25.31■■□□□ 1.64
CHRNA1P02708 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CHRNA1P02708 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC25.3■■□□□ 1.64
CHRNA1P02708 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CHRNA1P02708 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC25.3■■□□□ 1.64
CHRNA1P02708 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
CHRNA1P02708 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC25.3■■□□□ 1.64
CHRNA1P02708 AL355001.2-201ENST00000620617 1191 ntBASIC25.3■■□□□ 1.64
CHRNA1P02708 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.3■■□□□ 1.64
CHRNA1P02708 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CHRNA1P02708 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CHRNA1P02708 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
CHRNA1P02708 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
CHRNA1P02708 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC25.29■■□□□ 1.64
CHRNA1P02708 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC25.29■■□□□ 1.64
CHRNA1P02708 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC25.29■■□□□ 1.64
CHRNA1P02708 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
CHRNA1P02708 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
CHRNA1P02708 AC091060.1-201ENST00000623524 1766 ntBASIC25.28■■□□□ 1.64
CHRNA1P02708 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
CHRNA1P02708 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
CHRNA1P02708 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
CHRNA1P02708 STK32C-205ENST00000456004 607 ntTSL 2 BASIC25.28■■□□□ 1.64
CHRNA1P02708 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC25.28■■□□□ 1.64
CHRNA1P02708 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC25.28■■□□□ 1.64
CHRNA1P02708 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC25.28■■□□□ 1.64
CHRNA1P02708 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC25.28■■□□□ 1.64
CHRNA1P02708 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
CHRNA1P02708 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
CHRNA1P02708 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms