Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL3A1P02461 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL3A1P02461 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
COL3A1P02461 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
COL3A1P02461 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.96■■■□□ 2.55
COL3A1P02461 CD37-213ENST00000598095 1598 ntTSL 2 BASIC30.96■■■□□ 2.55
COL3A1P02461 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
COL3A1P02461 CD72-202ENST00000378430 585 ntTSL 3 BASIC30.96■■■□□ 2.55
COL3A1P02461 AC004448.1-201ENST00000458332 883 ntBASIC30.96■■■□□ 2.55
COL3A1P02461 AC010997.5-201ENST00000609182 354 ntBASIC30.96■■■□□ 2.55
COL3A1P02461 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC30.96■■■□□ 2.55
COL3A1P02461 HLA-L-211ENST00000482052 1765 ntBASIC30.96■■■□□ 2.55
COL3A1P02461 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
COL3A1P02461 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC30.95■■■□□ 2.55
COL3A1P02461 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.95■■■□□ 2.54
COL3A1P02461 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC30.95■■■□□ 2.54
COL3A1P02461 EXOG-217ENST00000630638 197 ntTSL 5 BASIC30.95■■■□□ 2.54
COL3A1P02461 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC30.94■■■□□ 2.54
COL3A1P02461 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC30.94■■■□□ 2.54
COL3A1P02461 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC30.94■■■□□ 2.54
COL3A1P02461 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL3A1P02461 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL3A1P02461 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC30.93■■■□□ 2.54
COL3A1P02461 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL3A1P02461 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL3A1P02461 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL3A1P02461 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC30.92■■■□□ 2.54
COL3A1P02461 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC30.92■■■□□ 2.54
COL3A1P02461 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC30.92■■■□□ 2.54
COL3A1P02461 MIR6724-1-201ENST00000616420 92 ntBASIC30.92■■■□□ 2.54
COL3A1P02461 MIR6724-2-201ENST00000616483 92 ntBASIC30.92■■■□□ 2.54
COL3A1P02461 MIR6724-4-201ENST00000617390 92 ntBASIC30.92■■■□□ 2.54
COL3A1P02461 MIR6724-3-201ENST00000622482 92 ntBASIC30.92■■■□□ 2.54
COL3A1P02461 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC30.92■■■□□ 2.54
COL3A1P02461 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL3A1P02461 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC30.91■■■□□ 2.54
COL3A1P02461 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL3A1P02461 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.91■■■□□ 2.54
COL3A1P02461 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL3A1P02461 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.91■■■□□ 2.54
COL3A1P02461 AC131281.2-201ENST00000520478 145 ntBASIC30.9■■■□□ 2.54
COL3A1P02461 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC30.9■■■□□ 2.54
COL3A1P02461 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL3A1P02461 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC30.9■■■□□ 2.54
COL3A1P02461 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL3A1P02461 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC30.89■■■□□ 2.54
COL3A1P02461 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
COL3A1P02461 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
COL3A1P02461 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.89■■■□□ 2.54
COL3A1P02461 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL3A1P02461 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC30.89■■■□□ 2.54
COL3A1P02461 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL3A1P02461 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL3A1P02461 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
COL3A1P02461 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.53
COL3A1P02461 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.89■■■□□ 2.53
COL3A1P02461 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.89■■■□□ 2.53
COL3A1P02461 MIR6722-201ENST00000617286 78 ntBASIC30.89■■■□□ 2.53
COL3A1P02461 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
COL3A1P02461 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC30.88■■■□□ 2.53
COL3A1P02461 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC30.88■■■□□ 2.53
COL3A1P02461 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.88■■■□□ 2.53
COL3A1P02461 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC30.88■■■□□ 2.53
COL3A1P02461 AP003733.4-201ENST00000623785 1697 ntBASIC30.88■■■□□ 2.53
COL3A1P02461 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.88■■■□□ 2.53
COL3A1P02461 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC30.88■■■□□ 2.53
COL3A1P02461 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC30.88■■■□□ 2.53
COL3A1P02461 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC30.88■■■□□ 2.53
COL3A1P02461 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC30.88■■■□□ 2.53
COL3A1P02461 AL512631.2-201ENST00000604634 923 ntBASIC30.88■■■□□ 2.53
COL3A1P02461 RASSF1-AS1-201ENST00000629828 790 ntBASIC30.88■■■□□ 2.53
COL3A1P02461 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC30.87■■■□□ 2.53
COL3A1P02461 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
COL3A1P02461 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL3A1P02461 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC30.87■■■□□ 2.53
COL3A1P02461 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
COL3A1P02461 TFPT-201ENST00000391757 774 ntTSL 5 BASIC30.86■■■□□ 2.53
COL3A1P02461 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
COL3A1P02461 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
COL3A1P02461 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC30.86■■■□□ 2.53
COL3A1P02461 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC30.86■■■□□ 2.53
COL3A1P02461 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
COL3A1P02461 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
COL3A1P02461 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL3A1P02461 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL3A1P02461 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
COL3A1P02461 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL3A1P02461 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
COL3A1P02461 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
COL3A1P02461 MIR3621-201ENST00000580529 85 ntBASIC30.84■■■□□ 2.53
COL3A1P02461 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.84■■■□□ 2.53
COL3A1P02461 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL3A1P02461 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL3A1P02461 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC30.84■■■□□ 2.53
COL3A1P02461 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC30.84■■■□□ 2.53
COL3A1P02461 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL3A1P02461 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL3A1P02461 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.83■■■□□ 2.53
COL3A1P02461 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC30.83■■■□□ 2.53
COL3A1P02461 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms