Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC30.85■■■□□ 2.53
MSH5O43196 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC30.85■■■□□ 2.53
MSH5O43196 AC010997.5-201ENST00000609182 354 ntBASIC30.85■■■□□ 2.53
MSH5O43196 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
MSH5O43196 CASK-201ENST00000378154 2494 ntTSL 5 BASIC30.85■■■□□ 2.53
MSH5O43196 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC30.85■■■□□ 2.53
MSH5O43196 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
MSH5O43196 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
MSH5O43196 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
MSH5O43196 KRT18P10-201ENST00000388836 1287 ntBASIC30.84■■■□□ 2.53
MSH5O43196 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
MSH5O43196 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC30.84■■■□□ 2.53
MSH5O43196 AC012676.1-201ENST00000574705 1949 ntBASIC30.83■■■□□ 2.53
MSH5O43196 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.83■■■□□ 2.53
MSH5O43196 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC30.83■■■□□ 2.53
MSH5O43196 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
MSH5O43196 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
MSH5O43196 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
MSH5O43196 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
MSH5O43196 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC30.82■■■□□ 2.52
MSH5O43196 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC30.82■■■□□ 2.52
MSH5O43196 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC30.82■■■□□ 2.52
MSH5O43196 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.82■■■□□ 2.52
MSH5O43196 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
MSH5O43196 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
MSH5O43196 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
MSH5O43196 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.81■■■□□ 2.52
MSH5O43196 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
MSH5O43196 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
MSH5O43196 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC30.8■■■□□ 2.52
MSH5O43196 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
MSH5O43196 MIR3621-201ENST00000580529 85 ntBASIC30.8■■■□□ 2.52
MSH5O43196 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
MSH5O43196 AL356740.2-201ENST00000601559 647 ntBASIC30.8■■■□□ 2.52
MSH5O43196 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
MSH5O43196 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
MSH5O43196 PREB-202ENST00000406567 1910 ntTSL 5 BASIC30.79■■■□□ 2.52
MSH5O43196 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
MSH5O43196 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC30.79■■■□□ 2.52
MSH5O43196 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
MSH5O43196 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
MSH5O43196 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
MSH5O43196 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
MSH5O43196 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
MSH5O43196 MIR4466-201ENST00000606121 54 ntBASIC30.78■■■□□ 2.52
MSH5O43196 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC30.78■■■□□ 2.52
MSH5O43196 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC30.78■■■□□ 2.52
MSH5O43196 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
MSH5O43196 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
MSH5O43196 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
MSH5O43196 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
MSH5O43196 AC012497.1-201ENST00000429392 575 ntBASIC30.77■■■□□ 2.52
MSH5O43196 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC30.77■■■□□ 2.52
MSH5O43196 MTDHP2-201ENST00000601468 714 ntBASIC30.77■■■□□ 2.52
MSH5O43196 MIR6724-1-201ENST00000616420 92 ntBASIC30.77■■■□□ 2.52
MSH5O43196 MIR6724-2-201ENST00000616483 92 ntBASIC30.77■■■□□ 2.52
MSH5O43196 MIR6724-4-201ENST00000617390 92 ntBASIC30.77■■■□□ 2.52
MSH5O43196 MIR6724-3-201ENST00000622482 92 ntBASIC30.77■■■□□ 2.52
MSH5O43196 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC30.76■■■□□ 2.51
MSH5O43196 RARRES2P6-201ENST00000567333 442 ntBASIC30.76■■■□□ 2.51
MSH5O43196 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
MSH5O43196 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.76■■■□□ 2.51
MSH5O43196 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.51
MSH5O43196 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.75■■■□□ 2.51
MSH5O43196 CCDC136-202ENST00000378685 1689 ntAPPRIS ALT2 TSL 2 BASIC30.75■■■□□ 2.51
MSH5O43196 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
MSH5O43196 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
MSH5O43196 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
MSH5O43196 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC30.74■■■□□ 2.51
MSH5O43196 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
MSH5O43196 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
MSH5O43196 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC30.74■■■□□ 2.51
MSH5O43196 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
MSH5O43196 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC30.74■■■□□ 2.51
MSH5O43196 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.73■■■□□ 2.51
MSH5O43196 ZNRF2P3-201ENST00000424200 374 ntBASIC30.73■■■□□ 2.51
MSH5O43196 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC30.73■■■□□ 2.51
MSH5O43196 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC30.73■■■□□ 2.51
MSH5O43196 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC30.73■■■□□ 2.51
MSH5O43196 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
MSH5O43196 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
MSH5O43196 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC30.72■■■□□ 2.51
MSH5O43196 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
MSH5O43196 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
MSH5O43196 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC30.71■■■□□ 2.51
MSH5O43196 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.71■■■□□ 2.51
MSH5O43196 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
MSH5O43196 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC30.71■■■□□ 2.51
MSH5O43196 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
MSH5O43196 AC068473.5-201ENST00000616428 2072 ntBASIC30.7■■■□□ 2.51
MSH5O43196 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC30.7■■■□□ 2.51
MSH5O43196 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.7■■■□□ 2.51
MSH5O43196 AC133561.4-201ENST00000566112 224 ntBASIC30.7■■■□□ 2.51
MSH5O43196 MIR4281-201ENST00000580852 62 ntBASIC30.7■■■□□ 2.51
MSH5O43196 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
MSH5O43196 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
MSH5O43196 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
MSH5O43196 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
MSH5O43196 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
MSH5O43196 AK3-203ENST00000447596 705 ntTSL 2 BASIC30.69■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 185 ms