Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMKR1H3BMG3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMKR1H3BMG3 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC16.83■□□□□ 0.28
SMKR1H3BMG3 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC16.83■□□□□ 0.28
SMKR1H3BMG3 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SMKR1H3BMG3 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMKR1H3BMG3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMKR1H3BMG3 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC16.82■□□□□ 0.28
SMKR1H3BMG3 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMKR1H3BMG3 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMKR1H3BMG3 AL162393.1-201ENST00000437852 946 ntBASIC16.82■□□□□ 0.28
SMKR1H3BMG3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMKR1H3BMG3 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SMKR1H3BMG3 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SMKR1H3BMG3 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC16.81■□□□□ 0.28
SMKR1H3BMG3 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMKR1H3BMG3 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMKR1H3BMG3 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMKR1H3BMG3 HLA-V-202ENST00000446817 847 ntBASIC16.81■□□□□ 0.28
SMKR1H3BMG3 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMKR1H3BMG3 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMKR1H3BMG3 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SMKR1H3BMG3 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 TERT-206ENST00000508104 2486 ntTSL 5 BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SMKR1H3BMG3 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SMKR1H3BMG3 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L13-201ENST00000554103 1267 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L15-201ENST00000611059 1267 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L23-201ENST00000615195 1269 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L24-201ENST00000617576 1269 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L22-201ENST00000618238 1269 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L20-201ENST00000619712 1269 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L21-201ENST00000622058 1269 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L10-201ENST00000622460 1267 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 DUX4L25-201ENST00000624915 1269 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 C1orf229-201ENST00000623686 2258 ntBASIC16.78■□□□□ 0.28
SMKR1H3BMG3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 USP48-205ENST00000421625 2818 ntTSL 2 BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
SMKR1H3BMG3 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC16.77■□□□□ 0.28
SMKR1H3BMG3 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMKR1H3BMG3 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMKR1H3BMG3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMKR1H3BMG3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
SMKR1H3BMG3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
SMKR1H3BMG3 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms