Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AC092552.1-201ENST00000547243 906 ntBASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AL359711.2-201ENST00000563105 872 ntBASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AC093726.1-201ENST00000608064 963 ntBASIC16.38■□□□□ 0.21
SIX2Q9NPC8 AC009118.2-201ENST00000613275 655 ntBASIC16.38■□□□□ 0.21
SIX2Q9NPC8 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 SCFD2-201ENST00000388940 2221 ntTSL 2 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
SIX2Q9NPC8 ZNF683-201ENST00000349618 1610 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AL139094.1-201ENST00000405549 1188 ntBASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AC134915.1-201ENST00000426461 574 ntBASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AL442647.2-201ENST00000429864 857 ntBASIC16.37■□□□□ 0.21
SIX2Q9NPC8 DFFBP1-201ENST00000433250 979 ntBASIC16.37■□□□□ 0.21
SIX2Q9NPC8 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 RPL13AP25-201ENST00000484130 612 ntBASIC16.37■□□□□ 0.21
SIX2Q9NPC8 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 DUX4L47-201ENST00000566374 394 ntBASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AJ011932.1-201ENST00000621707 465 ntBASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AC007431.3-201ENST00000623221 587 ntBASIC16.37■□□□□ 0.21
SIX2Q9NPC8 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 PCED1B-201ENST00000432328 1862 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
SIX2Q9NPC8 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 RNU1-114P-201ENST00000365297 166 ntBASIC16.36■□□□□ 0.21
SIX2Q9NPC8 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 C1QBPP1-201ENST00000400117 770 ntBASIC16.36■□□□□ 0.21
SIX2Q9NPC8 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 TSPY16P-201ENST00000449843 468 ntBASIC16.36■□□□□ 0.21
SIX2Q9NPC8 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 AC123567.1-201ENST00000548294 1261 ntBASIC16.36■□□□□ 0.21
SIX2Q9NPC8 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 AL132655.2-201ENST00000596276 594 ntBASIC16.36■□□□□ 0.21
SIX2Q9NPC8 BX539320.1-201ENST00000623759 877 ntBASIC16.36■□□□□ 0.21
SIX2Q9NPC8 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.36■□□□□ 0.21
SIX2Q9NPC8 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms