Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 RPL18-209ENST00000550645 463 ntTSL 5 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 RPL18-214ENST00000552588 559 ntTSL 3 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 KLK8-205ENST00000593490 267 ntTSL 3 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AC027601.4-201ENST00000611259 610 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 AC041040.2-201ENST00000622926 2899 ntBASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 RPS6KC1-208ENST00000614059 4188 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CHMP1AQ9HD42 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 PER3-201ENST00000361923 6203 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 AC140113.2-201ENST00000604370 208 ntBASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 AJ011931.1-201ENST00000618749 2492 ntBASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CHMP1AQ9HD42 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AL136982.4-201ENST00000437689 1740 ntBASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 FOXO1B-201ENST00000504678 1527 ntBASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
CHMP1AQ9HD42 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms