Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 BCAR1-208ENST00000542031 2846 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 MARK1-201ENST00000366917 2946 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC13.64□□□□□ -0.23
MMP28Q9H239 ARHGAP45-201ENST00000313093 4273 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 CLK4-201ENST00000316308 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 RHOQP3-201ENST00000437982 621 ntBASIC13.64□□□□□ -0.23
MMP28Q9H239 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.64□□□□□ -0.23
MMP28Q9H239 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.64□□□□□ -0.23
MMP28Q9H239 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.64□□□□□ -0.23
MMP28Q9H239 AC040169.1-201ENST00000565382 521 ntBASIC13.64□□□□□ -0.23
MMP28Q9H239 MIR3687-2-201ENST00000577708 61 ntBASIC13.64□□□□□ -0.23
MMP28Q9H239 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.64□□□□□ -0.23
MMP28Q9H239 AC023141.13-201ENST00000604991 943 ntBASIC13.64□□□□□ -0.23
MMP28Q9H239 MIR3687-1-201ENST00000614492 61 ntBASIC13.64□□□□□ -0.23
MMP28Q9H239 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 PRRT2-201ENST00000300797 3002 ntTSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
MMP28Q9H239 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC13.64□□□□□ -0.23
MMP28Q9H239 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.64□□□□□ -0.23
MMP28Q9H239 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 FES-203ENST00000394302 2133 ntTSL 5 BASIC13.64□□□□□ -0.23
MMP28Q9H239 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 AC152010.1-201ENST00000415779 2006 ntBASIC13.64□□□□□ -0.23
MMP28Q9H239 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 MAN2B1-203ENST00000456935 3184 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
MMP28Q9H239 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
MMP28Q9H239 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
MMP28Q9H239 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.64□□□□□ -0.23
MMP28Q9H239 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 RIN3-201ENST00000216487 3859 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 TMEM104-201ENST00000335464 4745 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
MMP28Q9H239 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 AC022028.2-201ENST00000474115 2619 ntTSL 2 BASIC13.63□□□□□ -0.23
MMP28Q9H239 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
MMP28Q9H239 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC13.63□□□□□ -0.23
MMP28Q9H239 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
MMP28Q9H239 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
MMP28Q9H239 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
MMP28Q9H239 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 AC127383.1-201ENST00000444697 1800 ntBASIC13.63□□□□□ -0.23
MMP28Q9H239 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC13.63□□□□□ -0.23
MMP28Q9H239 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 YBX2P1-201ENST00000394192 760 ntBASIC13.63□□□□□ -0.23
MMP28Q9H239 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 RPSAP43-201ENST00000402237 625 ntBASIC13.63□□□□□ -0.23
MMP28Q9H239 IMP4-203ENST00000409935 958 ntTSL 5 BASIC13.63□□□□□ -0.23
MMP28Q9H239 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC13.63□□□□□ -0.23
MMP28Q9H239 RPS8P6-201ENST00000426177 609 ntBASIC13.63□□□□□ -0.23
MMP28Q9H239 GPX1P2-201ENST00000429271 606 ntBASIC13.63□□□□□ -0.23
MMP28Q9H239 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.63□□□□□ -0.23
MMP28Q9H239 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.63□□□□□ -0.23
MMP28Q9H239 RPS15-207ENST00000591032 550 ntTSL 3 BASIC13.63□□□□□ -0.23
MMP28Q9H239 RPS15-212ENST00000593052 629 ntTSL 2 BASIC13.63□□□□□ -0.23
MMP28Q9H239 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC13.63□□□□□ -0.23
MMP28Q9H239 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.63□□□□□ -0.23
MMP28Q9H239 GP6-201ENST00000310373 2268 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC13.63□□□□□ -0.23
MMP28Q9H239 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.63□□□□□ -0.23
MMP28Q9H239 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
MMP28Q9H239 AC019294.4-201ENST00000561777 2905 ntBASIC13.63□□□□□ -0.23
MMP28Q9H239 SLC9A3P2-201ENST00000447821 2021 ntBASIC13.63□□□□□ -0.23
MMP28Q9H239 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
MMP28Q9H239 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 AC113367.3-201ENST00000508316 1912 ntBASIC13.62□□□□□ -0.23
MMP28Q9H239 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
MMP28Q9H239 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms