Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 AC012441.2-201ENST00000444843 739 ntBASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 AC098935.1-201ENST00000446057 611 ntBASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 AC073150.1-201ENST00000450406 1084 ntBASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 AC011491.1-203ENST00000637688 543 ntBASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC18.34■□□□□ 0.53
RTFDC1Q9BY42 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 AMT-239ENST00000636865 1914 ntTSL 5 BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 AL138725.1-201ENST00000407347 1314 ntBASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC18.33■□□□□ 0.53
RTFDC1Q9BY42 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 AC090857.1-201ENST00000527400 390 ntBASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 GLIDR-205ENST00000640674 884 ntTSL 5 BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 AC244394.1-201ENST00000435000 1665 ntBASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 AC020910.5-201ENST00000623668 1865 ntBASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RTFDC1Q9BY42 DOC2GP-204ENST00000639052 2548 ntBASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 LETMD1-206ENST00000547008 1665 ntTSL 2 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 SERF2-209ENST00000409646 559 ntTSL 4 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 FGFR3P1-201ENST00000449999 601 ntBASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 NOC2LP1-201ENST00000450578 752 ntBASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 NPM1P43-201ENST00000558669 786 ntBASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 WDR7-208ENST00000589935 544 ntTSL 4 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 ZNF596-213ENST00000640035 1163 ntTSL 5 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 Z98259.2-201ENST00000641583 609 ntBASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 AL137783.1-201ENST00000623494 1896 ntBASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RTFDC1Q9BY42 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms