Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 TAF8-206ENST00000472818 719 ntTSL 2 BASIC13.72□□□□□ -0.21
H3F3AP84243 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC13.72□□□□□ -0.21
H3F3AP84243 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC13.72□□□□□ -0.21
H3F3AP84243 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC13.72□□□□□ -0.21
H3F3AP84243 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.72□□□□□ -0.21
H3F3AP84243 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.72□□□□□ -0.21
H3F3AP84243 BX539320.1-201ENST00000623759 877 ntBASIC13.72□□□□□ -0.21
H3F3AP84243 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 AL033527.5-201ENST00000641382 801 ntBASIC13.72□□□□□ -0.21
H3F3AP84243 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
H3F3AP84243 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
H3F3AP84243 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
H3F3AP84243 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC13.72□□□□□ -0.21
H3F3AP84243 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
H3F3AP84243 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.71□□□□□ -0.21
H3F3AP84243 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC13.71□□□□□ -0.21
H3F3AP84243 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC13.71□□□□□ -0.21
H3F3AP84243 AL360270.3-201ENST00000609118 1348 ntBASIC13.71□□□□□ -0.21
H3F3AP84243 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.71□□□□□ -0.21
H3F3AP84243 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.71□□□□□ -0.21
H3F3AP84243 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 AP006294.1-201ENST00000415407 339 ntBASIC13.71□□□□□ -0.21
H3F3AP84243 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC13.71□□□□□ -0.21
H3F3AP84243 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
H3F3AP84243 AP005018.1-201ENST00000525475 301 ntBASIC13.71□□□□□ -0.21
H3F3AP84243 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC13.71□□□□□ -0.21
H3F3AP84243 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.71□□□□□ -0.21
H3F3AP84243 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC13.71□□□□□ -0.21
H3F3AP84243 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 AL596325.1-201ENST00000563991 1082 ntBASIC13.71□□□□□ -0.21
H3F3AP84243 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
H3F3AP84243 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC13.71□□□□□ -0.21
H3F3AP84243 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.71□□□□□ -0.21
H3F3AP84243 AC005252.2-201ENST00000624630 1141 ntBASIC13.71□□□□□ -0.21
H3F3AP84243 ABBA01031660.1-201ENST00000635219 756 ntBASIC13.71□□□□□ -0.21
H3F3AP84243 AL358472.5-202ENST00000641448 1267 ntBASIC13.71□□□□□ -0.21
H3F3AP84243 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 AC006058.4-201ENST00000624016 1670 ntBASIC13.71□□□□□ -0.21
H3F3AP84243 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
H3F3AP84243 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.71□□□□□ -0.21
H3F3AP84243 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
H3F3AP84243 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
H3F3AP84243 AL158070.2-201ENST00000623713 1621 ntBASIC13.71□□□□□ -0.22
H3F3AP84243 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
H3F3AP84243 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.71□□□□□ -0.22
H3F3AP84243 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.71□□□□□ -0.22
H3F3AP84243 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
H3F3AP84243 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
H3F3AP84243 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
H3F3AP84243 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC13.71□□□□□ -0.22
H3F3AP84243 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
H3F3AP84243 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
H3F3AP84243 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.71□□□□□ -0.22
H3F3AP84243 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.22
H3F3AP84243 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.71□□□□□ -0.22
H3F3AP84243 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC13.71□□□□□ -0.22
H3F3AP84243 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC13.71□□□□□ -0.22
H3F3AP84243 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC13.7□□□□□ -0.22
H3F3AP84243 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
H3F3AP84243 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC13.7□□□□□ -0.22
H3F3AP84243 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC13.7□□□□□ -0.22
H3F3AP84243 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
H3F3AP84243 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms