Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HDAC4P56524 AL122018.1-201ENST00000446607 2310 ntBASIC16.05■□□□□ 0.16
HDAC4P56524 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC16.05■□□□□ 0.16
HDAC4P56524 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HDAC4P56524 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 REXO1L2P-201ENST00000425429 2069 ntBASIC16.04■□□□□ 0.16
HDAC4P56524 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HDAC4P56524 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 ZBED1P1-201ENST00000502364 1930 ntBASIC16.04■□□□□ 0.16
HDAC4P56524 WASH3P-207ENST00000560956 1394 ntBASIC16.04■□□□□ 0.16
HDAC4P56524 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 PIN1P1-201ENST00000412108 996 ntBASIC16.04■□□□□ 0.16
HDAC4P56524 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC16.04■□□□□ 0.16
HDAC4P56524 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC16.04■□□□□ 0.16
HDAC4P56524 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 AC092552.1-201ENST00000547243 906 ntBASIC16.04■□□□□ 0.16
HDAC4P56524 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.04■□□□□ 0.16
HDAC4P56524 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.04■□□□□ 0.16
HDAC4P56524 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
HDAC4P56524 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HDAC4P56524 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.04■□□□□ 0.16
HDAC4P56524 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
HDAC4P56524 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
HDAC4P56524 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.03■□□□□ 0.16
HDAC4P56524 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.03■□□□□ 0.16
HDAC4P56524 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
HDAC4P56524 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
HDAC4P56524 INTS4P2-202ENST00000614726 2019 ntBASIC16.03■□□□□ 0.16
HDAC4P56524 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
HDAC4P56524 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 AC087499.6-201ENST00000411576 835 ntBASIC16.03■□□□□ 0.16
HDAC4P56524 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.03■□□□□ 0.16
HDAC4P56524 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 TERF1P3-201ENST00000505638 1227 ntBASIC16.03■□□□□ 0.16
HDAC4P56524 AC104596.2-201ENST00000512793 793 ntBASIC16.03■□□□□ 0.16
HDAC4P56524 AC190387.1-201ENST00000551683 408 ntBASIC16.03■□□□□ 0.16
HDAC4P56524 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC16.03■□□□□ 0.16
HDAC4P56524 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.03■□□□□ 0.16
HDAC4P56524 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.03■□□□□ 0.16
HDAC4P56524 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.03■□□□□ 0.16
HDAC4P56524 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 AC007431.3-201ENST00000623221 587 ntBASIC16.03■□□□□ 0.16
HDAC4P56524 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
HDAC4P56524 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC16.03■□□□□ 0.16
HDAC4P56524 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms