Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC16.7■□□□□ 0.26
HTTP42858 HNRNPA1P42-201ENST00000458678 957 ntBASIC16.7■□□□□ 0.26
HTTP42858 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 FAS-202ENST00000352159 1722 ntTSL 5 BASIC16.7■□□□□ 0.26
HTTP42858 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 AL360270.3-201ENST00000609118 1348 ntBASIC16.7■□□□□ 0.26
HTTP42858 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.7■□□□□ 0.26
HTTP42858 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 MIR648-201ENST00000385046 94 ntBASIC16.7■□□□□ 0.26
HTTP42858 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 OR2R1P-201ENST00000441404 914 ntBASIC16.7■□□□□ 0.26
HTTP42858 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HTTP42858 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC16.7■□□□□ 0.26
HTTP42858 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HTTP42858 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.7■□□□□ 0.26
HTTP42858 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HTTP42858 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HTTP42858 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HTTP42858 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.69■□□□□ 0.26
HTTP42858 MTHFR-217ENST00000641820 1569 ntBASIC16.69■□□□□ 0.26
HTTP42858 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
HTTP42858 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 KRT17P5-201ENST00000332088 839 ntBASIC16.69■□□□□ 0.26
HTTP42858 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
HTTP42858 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 AC106827.1-201ENST00000366454 431 ntBASIC16.69■□□□□ 0.26
HTTP42858 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC16.69■□□□□ 0.26
HTTP42858 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC16.69■□□□□ 0.26
HTTP42858 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HTTP42858 AC127383.1-201ENST00000444697 1800 ntBASIC16.69■□□□□ 0.26
HTTP42858 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.69■□□□□ 0.26
HTTP42858 NCBP2-206ENST00000447325 2216 ntTSL 2 BASIC16.69■□□□□ 0.26
HTTP42858 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC16.69■□□□□ 0.26
HTTP42858 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HTTP42858 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HTTP42858 GOSR2-203ENST00000415811 2171 ntTSL 5 BASIC16.68■□□□□ 0.26
HTTP42858 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 RBM4-207ENST00000506523 654 ntTSL 3 BASIC16.68■□□□□ 0.26
HTTP42858 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC16.68■□□□□ 0.26
HTTP42858 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC16.68■□□□□ 0.26
HTTP42858 TTC23L-209ENST00000638320 1185 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
HTTP42858 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 PCDHA14-201ENST00000506751 2298 ntBASIC16.68■□□□□ 0.26
HTTP42858 AC112504.1-201ENST00000623415 1841 ntBASIC16.68■□□□□ 0.26
HTTP42858 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.68■□□□□ 0.26
HTTP42858 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 ROPN1B-203ENST00000505382 713 ntTSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC16.68■□□□□ 0.26
HTTP42858 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HTTP42858 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
HTTP42858 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC16.68■□□□□ 0.26
HTTP42858 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.68■□□□□ 0.26
HTTP42858 BRSK1-203ENST00000585418 1104 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HTTP42858 AC007326.1-201ENST00000604539 458 ntBASIC16.68■□□□□ 0.26
HTTP42858 AC092299.1-201ENST00000632679 757 ntBASIC16.68■□□□□ 0.26
HTTP42858 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC16.67■□□□□ 0.26
HTTP42858 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
HTTP42858 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
HTTP42858 PPM1N-205ENST00000401705 771 ntTSL 3 BASIC16.67■□□□□ 0.26
HTTP42858 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms