Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC092364.2-201ENST00000596710 2692 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
BRCA1P38398 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
BRCA1P38398 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
BRCA1P38398 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
BRCA1P38398 PYY2-201ENST00000315776 282 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
BRCA1P38398 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
BRCA1P38398 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
BRCA1P38398 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC18.01■□□□□ 0.47
BRCA1P38398 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC18.01■□□□□ 0.47
BRCA1P38398 AC083801.1-201ENST00000491689 358 ntBASIC18.01■□□□□ 0.47
BRCA1P38398 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC18.01■□□□□ 0.47
BRCA1P38398 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC18.01■□□□□ 0.47
BRCA1P38398 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
BRCA1P38398 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC18.01■□□□□ 0.47
BRCA1P38398 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
BRCA1P38398 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
BRCA1P38398 G6PD-201ENST00000369620 1799 ntTSL 5 BASIC18■□□□□ 0.47
BRCA1P38398 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 CICP11-201ENST00000434745 2827 ntBASIC18■□□□□ 0.47
BRCA1P38398 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18■□□□□ 0.47
BRCA1P38398 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
BRCA1P38398 PTGER4P2-201ENST00000328411 252 ntBASIC18■□□□□ 0.47
BRCA1P38398 GNRH2-204ENST00000380347 758 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
BRCA1P38398 AL451105.2-201ENST00000413763 1234 ntTSL 5 BASIC18■□□□□ 0.47
BRCA1P38398 Metazoa_SRP.9-201ENST00000415635 283 ntBASIC18■□□□□ 0.47
BRCA1P38398 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC18■□□□□ 0.47
BRCA1P38398 PTGER4P3-201ENST00000458150 252 ntBASIC18■□□□□ 0.47
BRCA1P38398 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC18■□□□□ 0.47
BRCA1P38398 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC18■□□□□ 0.47
BRCA1P38398 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
BRCA1P38398 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
BRCA1P38398 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC18■□□□□ 0.47
BRCA1P38398 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
BRCA1P38398 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC18■□□□□ 0.47
BRCA1P38398 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC18■□□□□ 0.47
BRCA1P38398 STAG1-206ENST00000480733 1304 ntTSL 2 BASIC17.99■□□□□ 0.47
BRCA1P38398 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.99■□□□□ 0.47
BRCA1P38398 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.99■□□□□ 0.47
BRCA1P38398 OR2K2-201ENST00000302681 1078 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
BRCA1P38398 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
BRCA1P38398 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 AL009181.1-201ENST00000418471 1085 ntTSL 5 BASIC17.99■□□□□ 0.47
BRCA1P38398 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 RN7SL494P-201ENST00000461517 304 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 RN7SL277P-201ENST00000481521 288 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 AC093826.1-201ENST00000508655 993 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC17.99■□□□□ 0.47
BRCA1P38398 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC17.99■□□□□ 0.47
BRCA1P38398 NAA38-205ENST00000575771 852 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 RN7SL357P-201ENST00000581065 298 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
BRCA1P38398 MIR6746-201ENST00000620971 63 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC17.99■□□□□ 0.47
BRCA1P38398 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 AC012508.2-201ENST00000567613 1472 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 KRT17P5-201ENST00000332088 839 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
BRCA1P38398 AC092580.1-201ENST00000433998 658 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 AL035414.1-201ENST00000451327 857 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 IGHV1-12-201ENST00000518307 205 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC17.99■□□□□ 0.47
BRCA1P38398 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
BRCA1P38398 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC17.99■□□□□ 0.47
BRCA1P38398 AC006548.2-201ENST00000605217 529 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 AC090510.3-201ENST00000615831 821 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 CYP1B1-AS1-221ENST00000627172 995 ntTSL 5 BASIC17.99■□□□□ 0.47
BRCA1P38398 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC17.99■□□□□ 0.47
BRCA1P38398 AC022211.2-201ENST00000585075 2527 ntBASIC17.99■□□□□ 0.47
BRCA1P38398 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
BRCA1P38398 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms