Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 PIGL-212ENST00000581006 554 ntTSL 4 BASIC14.08□□□□□ -0.16
MSX1P28360 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.08□□□□□ -0.16
MSX1P28360 AC133539.2-201ENST00000604757 467 ntBASIC14.08□□□□□ -0.16
MSX1P28360 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
MSX1P28360 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
MSX1P28360 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX1P28360 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
MSX1P28360 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
MSX1P28360 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX1P28360 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
MSX1P28360 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC14.08□□□□□ -0.16
MSX1P28360 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 AC148477.4-201ENST00000613430 1793 ntBASIC14.07□□□□□ -0.16
MSX1P28360 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX1P28360 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX1P28360 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC14.07□□□□□ -0.16
MSX1P28360 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 AL645937.2-201ENST00000396808 931 ntBASIC14.07□□□□□ -0.16
MSX1P28360 NUS1P3-201ENST00000423502 862 ntBASIC14.07□□□□□ -0.16
MSX1P28360 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.07□□□□□ -0.16
MSX1P28360 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.07□□□□□ -0.16
MSX1P28360 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.07□□□□□ -0.16
MSX1P28360 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 SNX29P1-201ENST00000548357 1007 ntBASIC14.07□□□□□ -0.16
MSX1P28360 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX1P28360 AC120045.2-201ENST00000567334 178 ntBASIC14.07□□□□□ -0.16
MSX1P28360 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.07□□□□□ -0.16
MSX1P28360 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC14.07□□□□□ -0.16
MSX1P28360 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 Metazoa_SRP.67-201ENST00000617099 296 ntBASIC14.07□□□□□ -0.16
MSX1P28360 MIR6775-201ENST00000617557 69 ntBASIC14.07□□□□□ -0.16
MSX1P28360 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX1P28360 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.07□□□□□ -0.16
MSX1P28360 AC132872.4-202ENST00000622924 2756 ntBASIC14.07□□□□□ -0.16
MSX1P28360 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.07□□□□□ -0.16
MSX1P28360 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.07□□□□□ -0.16
MSX1P28360 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC14.07□□□□□ -0.16
MSX1P28360 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.07□□□□□ -0.16
MSX1P28360 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.06□□□□□ -0.16
MSX1P28360 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX1P28360 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.06□□□□□ -0.16
MSX1P28360 RPF1-202ENST00000370656 724 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX1P28360 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.06□□□□□ -0.16
MSX1P28360 C1QBPP1-201ENST00000400117 770 ntBASIC14.06□□□□□ -0.16
MSX1P28360 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
MSX1P28360 SOCS2P1-201ENST00000417727 557 ntBASIC14.06□□□□□ -0.16
MSX1P28360 KRT43P-201ENST00000434019 910 ntBASIC14.06□□□□□ -0.16
MSX1P28360 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.06□□□□□ -0.16
MSX1P28360 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC14.06□□□□□ -0.16
MSX1P28360 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.06□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms