Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.38□□□□□ -0.27
COL8A1P27658 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 AL157791.1-201ENST00000553667 1699 ntBASIC13.38□□□□□ -0.27
COL8A1P27658 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 GSG1L-201ENST00000380897 1173 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC13.38□□□□□ -0.27
COL8A1P27658 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 AGGF1P2-201ENST00000426656 2106 ntBASIC13.38□□□□□ -0.27
COL8A1P27658 HIST2H2BB-201ENST00000449108 381 ntBASIC13.38□□□□□ -0.27
COL8A1P27658 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC13.38□□□□□ -0.27
COL8A1P27658 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 RN7SL713P-201ENST00000582127 302 ntBASIC13.38□□□□□ -0.27
COL8A1P27658 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 GMFG-209ENST00000600322 622 ntTSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 OR10B1P-201ENST00000601666 907 ntBASIC13.38□□□□□ -0.27
COL8A1P27658 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 AC127024.7-201ENST00000625101 200 ntBASIC13.38□□□□□ -0.27
COL8A1P27658 AC022726.2-201ENST00000634673 547 ntBASIC13.38□□□□□ -0.27
COL8A1P27658 PRSS30P-206ENST00000641773 873 ntBASIC13.38□□□□□ -0.27
COL8A1P27658 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 LTF-203ENST00000426532 2494 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
COL8A1P27658 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC13.38□□□□□ -0.27
COL8A1P27658 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL8A1P27658 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 RN7SL832P-201ENST00000607781 1756 ntBASIC13.37□□□□□ -0.27
COL8A1P27658 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 KRT8P29-201ENST00000420409 1371 ntBASIC13.37□□□□□ -0.27
COL8A1P27658 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 RPS9-201ENST00000302907 829 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
COL8A1P27658 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC13.37□□□□□ -0.27
COL8A1P27658 DNAJB1P1-201ENST00000429417 1024 ntBASIC13.37□□□□□ -0.27
COL8A1P27658 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL8A1P27658 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC13.37□□□□□ -0.27
COL8A1P27658 AC010234.1-201ENST00000494599 870 ntBASIC13.37□□□□□ -0.27
COL8A1P27658 AC106794.1-201ENST00000506935 792 ntBASIC13.37□□□□□ -0.27
COL8A1P27658 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC13.37□□□□□ -0.27
COL8A1P27658 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC13.37□□□□□ -0.27
COL8A1P27658 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
COL8A1P27658 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC13.37□□□□□ -0.27
COL8A1P27658 AC073413.1-201ENST00000603927 732 ntBASIC13.37□□□□□ -0.27
COL8A1P27658 MIR6842-201ENST00000612539 65 ntBASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms