Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 DGCR5-201ENST00000399539 862 ntBASIC15.3■□□□□ 0.04
MSH3P20585 KRT8P44-201ENST00000441609 1350 ntBASIC15.3■□□□□ 0.04
MSH3P20585 GALT-202ENST00000450095 1280 ntTSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 DRD5P1-201ENST00000456605 1438 ntBASIC15.3■□□□□ 0.04
MSH3P20585 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.3■□□□□ 0.04
MSH3P20585 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.3■□□□□ 0.04
MSH3P20585 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.3■□□□□ 0.04
MSH3P20585 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 CTBP2P3-201ENST00000585629 1255 ntBASIC15.3■□□□□ 0.04
MSH3P20585 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
MSH3P20585 AC107373.2-201ENST00000607735 490 ntBASIC15.3■□□□□ 0.04
MSH3P20585 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
MSH3P20585 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 AMT-232ENST00000636199 1546 ntTSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC15.3■□□□□ 0.04
MSH3P20585 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.3■□□□□ 0.04
MSH3P20585 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.3■□□□□ 0.04
MSH3P20585 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
MSH3P20585 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 AC148477.4-201ENST00000613430 1793 ntBASIC15.29■□□□□ 0.04
MSH3P20585 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC15.29■□□□□ 0.04
MSH3P20585 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 OR2I1P-210ENST00000642037 4691 ntBASIC15.29■□□□□ 0.04
MSH3P20585 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 NSL1-201ENST00000366976 722 ntTSL 2 BASIC15.29■□□□□ 0.04
MSH3P20585 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
MSH3P20585 C1QBPP1-201ENST00000400117 770 ntBASIC15.29■□□□□ 0.04
MSH3P20585 AP006294.1-201ENST00000415407 339 ntBASIC15.29■□□□□ 0.04
MSH3P20585 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC15.29■□□□□ 0.04
MSH3P20585 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 TAF8-206ENST00000472818 719 ntTSL 2 BASIC15.29■□□□□ 0.04
MSH3P20585 AC026410.3-201ENST00000514280 936 ntBASIC15.29■□□□□ 0.04
MSH3P20585 AL359711.2-201ENST00000563105 872 ntBASIC15.29■□□□□ 0.04
MSH3P20585 AC120045.2-201ENST00000567334 178 ntBASIC15.29■□□□□ 0.04
MSH3P20585 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 AC093813.1-201ENST00000605066 256 ntBASIC15.29■□□□□ 0.04
MSH3P20585 AC025048.6-201ENST00000634326 1161 ntBASIC15.29■□□□□ 0.04
MSH3P20585 AL358472.5-202ENST00000641448 1267 ntBASIC15.29■□□□□ 0.04
MSH3P20585 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.29■□□□□ 0.04
MSH3P20585 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.29■□□□□ 0.04
MSH3P20585 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC15.29■□□□□ 0.04
MSH3P20585 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 RAI14-202ENST00000428746 5064 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
MSH3P20585 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
MSH3P20585 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
MSH3P20585 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.29■□□□□ 0.04
MSH3P20585 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
MSH3P20585 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.28■□□□□ 0.04
MSH3P20585 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.28■□□□□ 0.04
MSH3P20585 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSH3P20585 CICP11-201ENST00000434745 2827 ntBASIC15.28■□□□□ 0.04
MSH3P20585 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms