Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 AC015656.1-201ENST00000624209 3578 ntBASIC16.98■□□□□ 0.31
TPM1P09493 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 UXT-AS1-201ENST00000590504 1525 ntBASIC16.98■□□□□ 0.31
TPM1P09493 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
TPM1P09493 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC16.98■□□□□ 0.31
TPM1P09493 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.98■□□□□ 0.31
TPM1P09493 FAM58CP-201ENST00000435741 640 ntBASIC16.98■□□□□ 0.31
TPM1P09493 AL591424.1-201ENST00000442569 1213 ntBASIC16.98■□□□□ 0.31
TPM1P09493 PP7080-204ENST00000510714 601 ntTSL 3 BASIC16.98■□□□□ 0.31
TPM1P09493 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.98■□□□□ 0.31
TPM1P09493 AC026120.1-201ENST00000611536 926 ntBASIC16.98■□□□□ 0.31
TPM1P09493 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 AC092865.6-201ENST00000642101 219 ntBASIC16.98■□□□□ 0.31
TPM1P09493 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TPM1P09493 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
TPM1P09493 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
TPM1P09493 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TPM1P09493 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
TPM1P09493 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TPM1P09493 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TPM1P09493 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC16.98■□□□□ 0.31
TPM1P09493 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC16.97■□□□□ 0.31
TPM1P09493 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 USP3-204ENST00000540797 5474 ntTSL 2 BASIC16.97■□□□□ 0.31
TPM1P09493 USP35-204ENST00000530267 2419 ntTSL 2 BASIC16.97■□□□□ 0.31
TPM1P09493 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC16.97■□□□□ 0.31
TPM1P09493 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.97■□□□□ 0.31
TPM1P09493 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC16.97■□□□□ 0.31
TPM1P09493 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
TPM1P09493 CAB39-201ENST00000258418 3826 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
TPM1P09493 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 GHSR-202ENST00000427970 912 ntBASIC16.97■□□□□ 0.31
TPM1P09493 AL353705.2-201ENST00000428243 662 ntBASIC16.97■□□□□ 0.31
TPM1P09493 SPCS2P4-201ENST00000436160 681 ntBASIC16.97■□□□□ 0.31
TPM1P09493 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
TPM1P09493 AC243562.1-201ENST00000560672 389 ntBASIC16.97■□□□□ 0.31
TPM1P09493 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.97■□□□□ 0.31
TPM1P09493 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.97■□□□□ 0.31
TPM1P09493 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 GRM7-215ENST00000486284 4241 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
TPM1P09493 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 AP3S2-216ENST00000617003 1561 ntBASIC16.97■□□□□ 0.31
TPM1P09493 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.97■□□□□ 0.31
TPM1P09493 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC16.97■□□□□ 0.31
TPM1P09493 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC16.97■□□□□ 0.31
TPM1P09493 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TPM1P09493 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TPM1P09493 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM1P09493 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM1P09493 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM1P09493 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM1P09493 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TPM1P09493 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM1P09493 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM1P09493 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM1P09493 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM1P09493 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC16.96■□□□□ 0.31
TPM1P09493 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM1P09493 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
TPM1P09493 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TPM1P09493 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms