Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC13.99□□□□□ -0.17
HOXD4P09016 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 AL121723.1-201ENST00000445194 1519 ntBASIC13.99□□□□□ -0.17
HOXD4P09016 ARMC5-205ENST00000563544 3549 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
HOXD4P09016 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC13.99□□□□□ -0.17
HOXD4P09016 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC13.99□□□□□ -0.17
HOXD4P09016 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 CR383656.2-201ENST00000548656 2254 ntBASIC13.98□□□□□ -0.17
HOXD4P09016 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC13.98□□□□□ -0.17
HOXD4P09016 LINC00528-201ENST00000600723 2160 ntBASIC13.98□□□□□ -0.17
HOXD4P09016 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
HOXD4P09016 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 KRT18P64-201ENST00000434946 1219 ntBASIC13.98□□□□□ -0.17
HOXD4P09016 KLF2P4-201ENST00000451959 1225 ntBASIC13.98□□□□□ -0.17
HOXD4P09016 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.98□□□□□ -0.17
HOXD4P09016 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 AC068587.3-201ENST00000526613 355 ntBASIC13.98□□□□□ -0.17
HOXD4P09016 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC13.98□□□□□ -0.17
HOXD4P09016 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC13.98□□□□□ -0.17
HOXD4P09016 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
HOXD4P09016 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
HOXD4P09016 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC13.98□□□□□ -0.17
HOXD4P09016 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
HOXD4P09016 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 PRAL-201ENST00000624952 3286 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC13.97□□□□□ -0.17
HOXD4P09016 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 ANKRD19P-201ENST00000338192 862 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXD4P09016 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
HOXD4P09016 BAATP1-201ENST00000412284 1225 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC13.97□□□□□ -0.17
HOXD4P09016 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
HOXD4P09016 BNIP3P42-201ENST00000454982 569 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
HOXD4P09016 VDAC1P7-201ENST00000462417 847 ntBASIC13.97□□□□□ -0.17
HOXD4P09016 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.97□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms