Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 MRPL35-201ENST00000254644 1061 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 NQO2-204ENST00000380454 851 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC098657.1-201ENST00000416270 1135 ntBASIC11.6□□□□□ -0.55
COL6A5A8TX70 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 DDX39B-AS1-208ENST00000420520 516 ntTSL 3 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 MAGEA7P-201ENST00000436482 942 ntBASIC11.6□□□□□ -0.55
COL6A5A8TX70 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 PAX5-210ENST00000520281 969 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AP003785.1-201ENST00000544959 492 ntTSL 4 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 FOXN3-AS2-201ENST00000554071 1262 ntBASIC11.6□□□□□ -0.55
COL6A5A8TX70 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 ARL16-215ENST00000622299 1053 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AP000769.1-203ENST00000637245 208 ntBASIC11.6□□□□□ -0.55
COL6A5A8TX70 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC027612.2-202ENST00000445955 1199 ntBASIC11.6□□□□□ -0.55
COL6A5A8TX70 MDH2-205ENST00000461263 648 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 RN7SL582P-201ENST00000491078 279 ntBASIC11.6□□□□□ -0.55
COL6A5A8TX70 MIR4640-201ENST00000581824 90 ntBASIC11.6□□□□□ -0.55
COL6A5A8TX70 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC11.6□□□□□ -0.55
COL6A5A8TX70 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC11.6□□□□□ -0.55
COL6A5A8TX70 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 AC092580.1-201ENST00000433998 658 ntBASIC11.59□□□□□ -0.55
COL6A5A8TX70 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 AC138701.2-201ENST00000553634 226 ntBASIC11.59□□□□□ -0.55
COL6A5A8TX70 FBXO36P1-201ENST00000579006 471 ntBASIC11.59□□□□□ -0.55
COL6A5A8TX70 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 AP006248.1-201ENST00000610471 67 ntBASIC11.59□□□□□ -0.55
COL6A5A8TX70 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
COL6A5A8TX70 AC106827.1-201ENST00000366454 431 ntBASIC11.59□□□□□ -0.55
COL6A5A8TX70 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC11.59□□□□□ -0.55
COL6A5A8TX70 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC11.59□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms