Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 AC134915.1-201ENST00000426461 574 ntBASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 AL442647.2-201ENST00000429864 857 ntBASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 ELK1P1-201ENST00000485699 580 ntBASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 AC120045.2-201ENST00000567334 178 ntBASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 TMEM261P1-201ENST00000604899 340 ntBASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 AC007787.1-201ENST00000588095 1583 ntBASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.54□□□□□ -0.08
ATG4BQ9Y4P1 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 AL359711.2-201ENST00000563105 872 ntBASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 CTBP2P3-201ENST00000585629 1255 ntBASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 AC027307.3-201ENST00000594262 1100 ntBASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 AC093813.1-201ENST00000605066 256 ntBASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
ATG4BQ9Y4P1 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
ATG4BQ9Y4P1 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms