Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 HIST3H2BA-201ENST00000436555 524 ntBASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 TARDBPP1-201ENST00000442013 1203 ntBASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 AC002472.2-201ENST00000442739 958 ntBASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 AC027369.6-201ENST00000525520 931 ntBASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 AL079307.3-201ENST00000556114 283 ntBASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 RN7SL204P-201ENST00000582831 262 ntBASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 AL589739.1-201ENST00000607720 493 ntBASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
KLHL28Q9NXS3 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 AC092580.3-201ENST00000430932 139 ntBASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 SLED1-202ENST00000512051 380 ntBASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 ZBED1P1-201ENST00000502364 1930 ntBASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 FAM45BP-202ENST00000592932 1624 ntBASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
KLHL28Q9NXS3 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
KLHL28Q9NXS3 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
KLHL28Q9NXS3 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
KLHL28Q9NXS3 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
KLHL28Q9NXS3 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
KLHL28Q9NXS3 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC14.4□□□□□ -0.1
KLHL28Q9NXS3 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
KLHL28Q9NXS3 AC013726.1-201ENST00000563747 2285 ntBASIC14.4□□□□□ -0.1
KLHL28Q9NXS3 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms