Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AC006001.1-201ENST00000325130 474 ntBASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 MIR1247-201ENST00000408206 136 ntBASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 FAM86HP-204ENST00000513466 959 ntBASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 MIR3615-201ENST00000581999 87 ntBASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AC145423.3-201ENST00000615987 467 ntBASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 AL138799.1-201ENST00000448213 1675 ntBASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
TM9SF3Q9HD45 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 MIR326-201ENST00000362220 95 ntBASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 GPAA1P2-201ENST00000417923 928 ntBASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 AC078819.1-201ENST00000547454 765 ntBASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 AC012085.1-201ENST00000548270 765 ntBASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 AC138951.2-201ENST00000623455 1161 ntBASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.05
TM9SF3Q9HD45 FAM45BP-202ENST00000592932 1624 ntBASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC15.35■□□□□ 0.05
TM9SF3Q9HD45 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms