Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 AC139749.1-202ENST00000617529 3139 ntBASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 TOMM22P5-201ENST00000416399 439 ntBASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 AC136604.1-201ENST00000418535 575 ntBASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 AC017083.2-201ENST00000608069 979 ntBASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
CLIP3Q96DZ5 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 ARSEP1-201ENST00000420443 635 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AL442647.2-201ENST00000429864 857 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 KRT17P8-201ENST00000540749 863 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 RAB43P1-201ENST00000561790 589 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AL391069.4-201ENST00000609583 481 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AL162274.1-201ENST00000617191 1098 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 LINC02447-202ENST00000501888 2146 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 AC118758.2-201ENST00000614242 2813 ntBASIC14.93□□□□□ -0.02
CLIP3Q96DZ5 GOLGA8DP-202ENST00000341390 2184 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 KRT8P22-201ENST00000562317 1415 ntBASIC14.92□□□□□ -0.02
CLIP3Q96DZ5 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.92□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.6 ms