Protein–RNA interactions for Protein: Q8TER0

SNED1, Sushi, nidogen and EGF-like domain-containing protein 1, humanhuman

Predictions only

Length 1,413 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNED1Q8TER0 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 CAP2P1-201ENST00000557743 1390 ntBASIC18.32■□□□□ 0.52
SNED1Q8TER0 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 FCRLB-202ENST00000367944 1172 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 FCRLB-203ENST00000367945 1131 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 AC012441.2-201ENST00000444843 739 ntBASIC18.32■□□□□ 0.52
SNED1Q8TER0 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 ALG3P1-201ENST00000508806 1114 ntBASIC18.32■□□□□ 0.52
SNED1Q8TER0 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC18.32■□□□□ 0.52
SNED1Q8TER0 AC026803.1-201ENST00000569130 274 ntBASIC18.32■□□□□ 0.52
SNED1Q8TER0 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SNED1Q8TER0 KRT8P21-201ENST00000430398 1491 ntBASIC18.31■□□□□ 0.52
SNED1Q8TER0 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 AL137783.1-201ENST00000623494 1896 ntBASIC18.31■□□□□ 0.52
SNED1Q8TER0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 DNAJB1P1-201ENST00000429417 1024 ntBASIC18.31■□□□□ 0.52
SNED1Q8TER0 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 AL109837.1-201ENST00000603272 613 ntBASIC18.31■□□□□ 0.52
SNED1Q8TER0 AC008825.2-201ENST00000603374 718 ntBASIC18.31■□□□□ 0.52
SNED1Q8TER0 AC007881.3-201ENST00000608897 607 ntBASIC18.31■□□□□ 0.52
SNED1Q8TER0 AP005117.1-202ENST00000581724 1908 ntBASIC18.31■□□□□ 0.52
SNED1Q8TER0 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.31■□□□□ 0.52
SNED1Q8TER0 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
SNED1Q8TER0 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 HTR7P1-202ENST00000624664 4411 ntBASIC18.3■□□□□ 0.52
SNED1Q8TER0 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 AL645933.1-201ENST00000440087 609 ntBASIC18.3■□□□□ 0.52
SNED1Q8TER0 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 AC008805.1-201ENST00000590892 364 ntBASIC18.3■□□□□ 0.52
SNED1Q8TER0 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 HPN-206ENST00000597419 1212 ntTSL 5 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SNED1Q8TER0 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC18.3■□□□□ 0.52
SNED1Q8TER0 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms