Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC18.9■□□□□ 0.62
SYNE4Q8N205 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SYNE4Q8N205 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SYNE4Q8N205 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.62
SYNE4Q8N205 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 AC253536.4-201ENST00000440539 267 ntBASIC18.89■□□□□ 0.61
SYNE4Q8N205 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 LDHBP1-201ENST00000455730 1119 ntBASIC18.89■□□□□ 0.61
SYNE4Q8N205 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 SDHD-202ENST00000525291 790 ntTSL 3 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SYNE4Q8N205 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC18.89■□□□□ 0.61
SYNE4Q8N205 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 MIR33B-201ENST00000385104 96 ntBASIC18.88■□□□□ 0.61
SYNE4Q8N205 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 TUBBP5-203ENST00000508529 1334 ntBASIC18.88■□□□□ 0.61
SYNE4Q8N205 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 OR6D1P-203ENST00000641209 4860 ntBASIC18.88■□□□□ 0.61
SYNE4Q8N205 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC18.88■□□□□ 0.61
SYNE4Q8N205 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SYNE4Q8N205 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AL136309.1-201ENST00000403917 691 ntBASIC18.87■□□□□ 0.61
SYNE4Q8N205 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 GHSR-202ENST00000427970 912 ntBASIC18.87■□□□□ 0.61
SYNE4Q8N205 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AP000593.2-201ENST00000542775 1433 ntBASIC18.87■□□□□ 0.61
SYNE4Q8N205 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AC126696.1-201ENST00000561567 756 ntTSL 3 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SYNE4Q8N205 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC18.87■□□□□ 0.61
SYNE4Q8N205 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms