Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HNRNPA1P13-201ENST00000510646 963 ntBASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 AP005018.1-201ENST00000525475 301 ntBASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 AL596325.1-201ENST00000563991 1082 ntBASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 WFDC1-204ENST00000613603 549 ntBASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 AL033527.5-201ENST00000641382 801 ntBASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 AC067750.1-201ENST00000608826 6545 ntBASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.23□□□□□ -0.13
NUP54Q7Z3B4 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 UMODL1-203ENST00000400424 5516 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 C1QBPP1-201ENST00000400117 770 ntBASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 SOCS2P1-201ENST00000417727 557 ntBASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 AL359711.2-201ENST00000563105 872 ntBASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 WASH4P-201ENST00000564273 1246 ntBASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 C18orf15-201ENST00000623680 2534 ntBASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 KRT8P22-201ENST00000562317 1415 ntBASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
NUP54Q7Z3B4 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
NUP54Q7Z3B4 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms