Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.58■□□□□ 0.24
KRT39Q6A163 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
KRT39Q6A163 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
KRT39Q6A163 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.58■□□□□ 0.24
KRT39Q6A163 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.24
KRT39Q6A163 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
KRT39Q6A163 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
KRT39Q6A163 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
KRT39Q6A163 AL158070.2-201ENST00000623713 1621 ntBASIC16.57■□□□□ 0.24
KRT39Q6A163 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
KRT39Q6A163 KRT8P22-201ENST00000562317 1415 ntBASIC16.57■□□□□ 0.24
KRT39Q6A163 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.57■□□□□ 0.24
KRT39Q6A163 AL360270.3-201ENST00000609118 1348 ntBASIC16.57■□□□□ 0.24
KRT39Q6A163 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
KRT39Q6A163 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.57■□□□□ 0.24
KRT39Q6A163 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC16.57■□□□□ 0.24
KRT39Q6A163 AC008494.3-201ENST00000606615 944 ntBASIC16.57■□□□□ 0.24
KRT39Q6A163 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
KRT39Q6A163 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.57■□□□□ 0.24
KRT39Q6A163 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
KRT39Q6A163 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
KRT39Q6A163 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
KRT39Q6A163 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.57■□□□□ 0.24
KRT39Q6A163 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.57■□□□□ 0.24
KRT39Q6A163 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
KRT39Q6A163 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
KRT39Q6A163 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.56■□□□□ 0.24
KRT39Q6A163 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC16.56■□□□□ 0.24
KRT39Q6A163 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
KRT39Q6A163 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.56■□□□□ 0.24
KRT39Q6A163 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.56■□□□□ 0.24
KRT39Q6A163 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.56■□□□□ 0.24
KRT39Q6A163 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 SOCS2P1-201ENST00000417727 557 ntBASIC16.56■□□□□ 0.24
KRT39Q6A163 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 NUS1P3-201ENST00000423502 862 ntBASIC16.56■□□□□ 0.24
KRT39Q6A163 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.56■□□□□ 0.24
KRT39Q6A163 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.56■□□□□ 0.24
KRT39Q6A163 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.56■□□□□ 0.24
KRT39Q6A163 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.56■□□□□ 0.24
KRT39Q6A163 TP53TG3HP-202ENST00000569755 579 ntBASIC16.56■□□□□ 0.24
KRT39Q6A163 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.56■□□□□ 0.24
KRT39Q6A163 AC133539.2-201ENST00000604757 467 ntBASIC16.56■□□□□ 0.24
KRT39Q6A163 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.56■□□□□ 0.24
KRT39Q6A163 BX539320.1-201ENST00000623759 877 ntBASIC16.56■□□□□ 0.24
KRT39Q6A163 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 TPO-203ENST00000346956 2923 ntTSL 5 BASIC16.56■□□□□ 0.24
KRT39Q6A163 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.56■□□□□ 0.24
KRT39Q6A163 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
KRT39Q6A163 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
KRT39Q6A163 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
KRT39Q6A163 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.55■□□□□ 0.24
KRT39Q6A163 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.55■□□□□ 0.24
KRT39Q6A163 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
KRT39Q6A163 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.55■□□□□ 0.24
KRT39Q6A163 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
KRT39Q6A163 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms