Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA1P55317 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC14.87□□□□□ -0.03
FOXA1P55317 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA1P55317 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA1P55317 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA1P55317 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA1P55317 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA1P55317 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA1P55317 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
FOXA1P55317 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA1P55317 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.87□□□□□ -0.03
FOXA1P55317 CNN2P2-201ENST00000443536 909 ntBASIC14.87□□□□□ -0.03
FOXA1P55317 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.87□□□□□ -0.03
FOXA1P55317 CNN2P3-201ENST00000450201 906 ntBASIC14.87□□□□□ -0.03
FOXA1P55317 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 SDHAP3-202ENST00000515467 728 ntBASIC14.87□□□□□ -0.03
FOXA1P55317 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.87□□□□□ -0.03
FOXA1P55317 AC027369.6-201ENST00000525520 931 ntBASIC14.87□□□□□ -0.03
FOXA1P55317 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.87□□□□□ -0.03
FOXA1P55317 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC14.87□□□□□ -0.03
FOXA1P55317 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC14.87□□□□□ -0.03
FOXA1P55317 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.87□□□□□ -0.03
FOXA1P55317 AL136317.3-201ENST00000618497 906 ntBASIC14.87□□□□□ -0.03
FOXA1P55317 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 AC113367.3-201ENST00000508316 1912 ntBASIC14.87□□□□□ -0.03
FOXA1P55317 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC14.87□□□□□ -0.03
FOXA1P55317 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 AL157414.3-201ENST00000624276 1954 ntBASIC14.87□□□□□ -0.03
FOXA1P55317 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
FOXA1P55317 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA1P55317 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
FOXA1P55317 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA1P55317 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC14.86□□□□□ -0.03
FOXA1P55317 AC007787.1-201ENST00000588095 1583 ntBASIC14.86□□□□□ -0.03
FOXA1P55317 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
FOXA1P55317 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
FOXA1P55317 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.86□□□□□ -0.03
FOXA1P55317 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.86□□□□□ -0.03
FOXA1P55317 KLF2P3-201ENST00000451977 1087 ntBASIC14.86□□□□□ -0.03
FOXA1P55317 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.86□□□□□ -0.03
FOXA1P55317 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC14.86□□□□□ -0.03
FOXA1P55317 AC069120.2-201ENST00000524091 540 ntBASIC14.86□□□□□ -0.03
FOXA1P55317 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC14.86□□□□□ -0.03
FOXA1P55317 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.86□□□□□ -0.03
FOXA1P55317 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC14.86□□□□□ -0.03
FOXA1P55317 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.86□□□□□ -0.03
FOXA1P55317 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA1P55317 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
FOXA1P55317 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC14.86□□□□□ -0.03
FOXA1P55317 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.86□□□□□ -0.03
FOXA1P55317 AC000095.1-201ENST00000603208 874 ntBASIC14.86□□□□□ -0.03
FOXA1P55317 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms