Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16■□□□□ 0.15
CDH6P55285 LINC01101-201ENST00000622953 1884 ntBASIC16■□□□□ 0.15
CDH6P55285 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 AC104457.1-201ENST00000401024 814 ntBASIC16■□□□□ 0.15
CDH6P55285 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16■□□□□ 0.15
CDH6P55285 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16■□□□□ 0.15
CDH6P55285 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16■□□□□ 0.15
CDH6P55285 TPRX2P-201ENST00000535362 881 ntBASIC16■□□□□ 0.15
CDH6P55285 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC16■□□□□ 0.15
CDH6P55285 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16■□□□□ 0.15
CDH6P55285 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16■□□□□ 0.15
CDH6P55285 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 AJ011932.1-201ENST00000621707 465 ntBASIC16■□□□□ 0.15
CDH6P55285 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16■□□□□ 0.15
CDH6P55285 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16■□□□□ 0.15
CDH6P55285 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC16■□□□□ 0.15
CDH6P55285 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC16■□□□□ 0.15
CDH6P55285 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC16■□□□□ 0.15
CDH6P55285 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
CDH6P55285 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.99■□□□□ 0.15
CDH6P55285 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.99■□□□□ 0.15
CDH6P55285 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
CDH6P55285 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.99■□□□□ 0.15
CDH6P55285 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC15.99■□□□□ 0.15
CDH6P55285 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.99■□□□□ 0.15
CDH6P55285 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.99■□□□□ 0.15
CDH6P55285 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC15.99■□□□□ 0.15
CDH6P55285 AC023310.3-201ENST00000557027 670 ntBASIC15.99■□□□□ 0.15
CDH6P55285 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.99■□□□□ 0.15
CDH6P55285 AC100756.1-201ENST00000562736 682 ntBASIC15.99■□□□□ 0.15
CDH6P55285 RARRES2P5-201ENST00000564013 466 ntBASIC15.99■□□□□ 0.15
CDH6P55285 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 AC138749.3-201ENST00000567691 622 ntBASIC15.99■□□□□ 0.15
CDH6P55285 AC036164.1-201ENST00000570544 333 ntBASIC15.99■□□□□ 0.15
CDH6P55285 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC15.99■□□□□ 0.15
CDH6P55285 AC116165.1-201ENST00000611806 668 ntBASIC15.99■□□□□ 0.15
CDH6P55285 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.99■□□□□ 0.15
CDH6P55285 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC15.99■□□□□ 0.15
CDH6P55285 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC15.99■□□□□ 0.15
CDH6P55285 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
CDH6P55285 FGD5P1-202ENST00000614866 2498 ntBASIC15.99■□□□□ 0.15
CDH6P55285 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH6P55285 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.98■□□□□ 0.15
CDH6P55285 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
CDH6P55285 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 60 ms