Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MRE11P49959 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
MRE11P49959 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC18.02■□□□□ 0.48
MRE11P49959 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
MRE11P49959 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MRE11P49959 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MRE11P49959 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MRE11P49959 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
MRE11P49959 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC18.02■□□□□ 0.48
MRE11P49959 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MRE11P49959 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
MRE11P49959 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC18.02■□□□□ 0.48
MRE11P49959 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
MRE11P49959 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC18.02■□□□□ 0.48
MRE11P49959 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC18.02■□□□□ 0.48
MRE11P49959 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC18.02■□□□□ 0.48
MRE11P49959 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.02■□□□□ 0.48
MRE11P49959 AL358472.5-202ENST00000641448 1267 ntBASIC18.02■□□□□ 0.48
MRE11P49959 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
MRE11P49959 KCNJ11-204ENST00000528731 2146 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
MRE11P49959 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC18.02■□□□□ 0.47
MRE11P49959 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC18.02■□□□□ 0.47
MRE11P49959 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
MRE11P49959 WASH3P-207ENST00000560956 1394 ntBASIC18.02■□□□□ 0.47
MRE11P49959 FO538757.1-201ENST00000623083 1397 ntBASIC18.02■□□□□ 0.47
MRE11P49959 CDH23-202ENST00000299366 3954 ntTSL 5 BASIC18.02■□□□□ 0.47
MRE11P49959 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
MRE11P49959 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
MRE11P49959 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.47
MRE11P49959 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
MRE11P49959 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC18.02■□□□□ 0.47
MRE11P49959 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
MRE11P49959 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
MRE11P49959 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
MRE11P49959 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 MST1P2-201ENST00000457982 2291 ntBASIC18.01■□□□□ 0.47
MRE11P49959 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC18.01■□□□□ 0.47
MRE11P49959 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.01■□□□□ 0.47
MRE11P49959 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.01■□□□□ 0.47
MRE11P49959 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
MRE11P49959 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC18.01■□□□□ 0.47
MRE11P49959 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.01■□□□□ 0.47
MRE11P49959 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC18.01■□□□□ 0.47
MRE11P49959 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
MRE11P49959 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.01■□□□□ 0.47
MRE11P49959 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 RNF151-202ENST00000569210 853 ntTSL 2 BASIC18.01■□□□□ 0.47
MRE11P49959 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.01■□□□□ 0.47
MRE11P49959 WT1-AS_2.1-201ENST00000613208 137 ntBASIC18.01■□□□□ 0.47
MRE11P49959 SNX12-206ENST00000622259 661 ntTSL 5 BASIC18.01■□□□□ 0.47
MRE11P49959 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.01■□□□□ 0.47
MRE11P49959 AP001267.2-201ENST00000532619 2086 ntBASIC18.01■□□□□ 0.47
MRE11P49959 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 SLC7A4-202ENST00000403586 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
MRE11P49959 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
MRE11P49959 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
MRE11P49959 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
MRE11P49959 PPT1-213ENST00000641319 2388 ntBASIC18.01■□□□□ 0.47
MRE11P49959 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
MRE11P49959 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC18■□□□□ 0.47
MRE11P49959 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC18■□□□□ 0.47
MRE11P49959 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MRE11P49959 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
MRE11P49959 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC18■□□□□ 0.47
MRE11P49959 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
MRE11P49959 SIGLEC16-202ENST00000602139 2510 ntTSL 5 BASIC18■□□□□ 0.47
MRE11P49959 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
MRE11P49959 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC18■□□□□ 0.47
MRE11P49959 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18■□□□□ 0.47
MRE11P49959 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC18■□□□□ 0.47
MRE11P49959 AC109322.1-201ENST00000524499 1264 ntBASIC18■□□□□ 0.47
MRE11P49959 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC18■□□□□ 0.47
MRE11P49959 AC018845.2-201ENST00000568326 409 ntBASIC18■□□□□ 0.47
MRE11P49959 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
MRE11P49959 NKAPP1-205ENST00000585790 367 ntBASIC18■□□□□ 0.47
MRE11P49959 AL365330.1-201ENST00000607459 531 ntBASIC18■□□□□ 0.47
MRE11P49959 BSG-214ENST00000614867 960 ntTSL 3 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms