Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
CXCL12P48061 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CXCL12P48061 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
CXCL12P48061 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 RBM38-204ENST00000371219 760 ntTSL 2 BASIC15.09■□□□□ 0.01
CXCL12P48061 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
CXCL12P48061 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.09■□□□□ 0.01
CXCL12P48061 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 VDAC1P1-201ENST00000439229 848 ntBASIC15.09■□□□□ 0.01
CXCL12P48061 PFN2-206ENST00000461930 606 ntTSL 4 BASIC15.09■□□□□ 0.01
CXCL12P48061 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CXCL12P48061 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.09■□□□□ 0.01
CXCL12P48061 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC15.09■□□□□ 0.01
CXCL12P48061 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.09■□□□□ 0.01
CXCL12P48061 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC15.09■□□□□ 0.01
CXCL12P48061 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.09■□□□□ 0.01
CXCL12P48061 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CXCL12P48061 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC15.08■□□□□ 0.01
CXCL12P48061 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CXCL12P48061 LINC02447-202ENST00000501888 2146 ntBASIC15.08■□□□□ 0.01
CXCL12P48061 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0.01
CXCL12P48061 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
CXCL12P48061 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
CXCL12P48061 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
CXCL12P48061 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
CXCL12P48061 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
CXCL12P48061 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
CXCL12P48061 MTHFR-217ENST00000641820 1569 ntBASIC15.08■□□□□ 0
CXCL12P48061 AC092364.2-201ENST00000596710 2692 ntBASIC15.08■□□□□ 0
CXCL12P48061 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 CRHR2-202ENST00000348438 1600 ntTSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 AC239868.1-201ENST00000369385 493 ntBASIC15.08■□□□□ 0
CXCL12P48061 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC15.08■□□□□ 0
CXCL12P48061 HPGD-203ENST00000422112 805 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 RPL7P35-201ENST00000446943 740 ntBASIC15.08■□□□□ 0
CXCL12P48061 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC15.08■□□□□ 0
CXCL12P48061 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 CCNC-217ENST00000523985 958 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC15.08■□□□□ 0
CXCL12P48061 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.08■□□□□ 0
CXCL12P48061 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 CR589904.1-202ENST00000611154 660 ntTSL 5 BASIC15.08■□□□□ 0
CXCL12P48061 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 AP001065.2-201ENST00000617205 644 ntBASIC15.08■□□□□ 0
CXCL12P48061 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 WDR45-224ENST00000485908 1301 ntTSL 5 BASIC15.08■□□□□ 0
CXCL12P48061 AL008718.2-201ENST00000609206 1313 ntBASIC15.08■□□□□ 0
CXCL12P48061 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.08■□□□□ 0
CXCL12P48061 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC15.08■□□□□ 0
CXCL12P48061 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
CXCL12P48061 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CXCL12P48061 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.08■□□□□ 0
CXCL12P48061 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.07■□□□□ 0
CXCL12P48061 NFIC-211ENST00000641145 8399 ntBASIC15.07■□□□□ 0
CXCL12P48061 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.07■□□□□ 0
CXCL12P48061 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CXCL12P48061 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.07■□□□□ 0
CXCL12P48061 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.07■□□□□ 0
CXCL12P48061 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC15.07■□□□□ 0
CXCL12P48061 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CXCL12P48061 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CXCL12P48061 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC15.07■□□□□ 0
CXCL12P48061 AP003680.1-201ENST00000598970 3660 ntBASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms