Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 BNIP3P29-201ENST00000598302 571 ntBASIC16.16■□□□□ 0.18
BDNFP23560 AC011447.5-201ENST00000616168 564 ntBASIC16.16■□□□□ 0.18
BDNFP23560 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
BDNFP23560 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
BDNFP23560 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC16.15■□□□□ 0.18
BDNFP23560 STX1A-203ENST00000395155 783 ntTSL 2 BASIC16.15■□□□□ 0.18
BDNFP23560 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 KRT8P14-201ENST00000414254 1442 ntBASIC16.15■□□□□ 0.18
BDNFP23560 AC099336.1-201ENST00000417053 1171 ntBASIC16.15■□□□□ 0.18
BDNFP23560 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC16.15■□□□□ 0.18
BDNFP23560 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 FOS-202ENST00000535987 1402 ntTSL 2 BASIC16.15■□□□□ 0.18
BDNFP23560 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC16.15■□□□□ 0.18
BDNFP23560 AC105917.1-201ENST00000506637 2539 ntBASIC16.15■□□□□ 0.18
BDNFP23560 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
BDNFP23560 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
BDNFP23560 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
BDNFP23560 AL157414.3-201ENST00000624276 1954 ntBASIC16.15■□□□□ 0.18
BDNFP23560 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.14■□□□□ 0.18
BDNFP23560 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
BDNFP23560 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
BDNFP23560 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 CNN2P8-201ENST00000421872 913 ntBASIC16.14■□□□□ 0.17
BDNFP23560 GHSR-202ENST00000427970 912 ntBASIC16.14■□□□□ 0.17
BDNFP23560 HLA-V-201ENST00000429037 534 ntBASIC16.14■□□□□ 0.17
BDNFP23560 FAM197Y7-201ENST00000432892 766 ntBASIC16.14■□□□□ 0.17
BDNFP23560 CSF2RBP1-201ENST00000447905 391 ntBASIC16.14■□□□□ 0.17
BDNFP23560 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.14■□□□□ 0.17
BDNFP23560 MFF-223ENST00000524634 647 ntTSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC16.14■□□□□ 0.17
BDNFP23560 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.14■□□□□ 0.17
BDNFP23560 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
BDNFP23560 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
BDNFP23560 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.14■□□□□ 0.17
BDNFP23560 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
BDNFP23560 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.14■□□□□ 0.17
BDNFP23560 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms