Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
CDH3P22223 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC15.14■□□□□ 0.01
CDH3P22223 RAC2-202ENST00000401529 569 ntTSL 4 BASIC15.14■□□□□ 0.01
CDH3P22223 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 COX5BP8-201ENST00000416911 349 ntBASIC15.14■□□□□ 0.01
CDH3P22223 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 CR383656.12-201ENST00000549567 513 ntBASIC15.14■□□□□ 0.01
CDH3P22223 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC15.14■□□□□ 0.01
CDH3P22223 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CDH3P22223 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 PGR-210ENST00000619228 3038 ntTSL 5 BASIC15.14■□□□□ 0.01
CDH3P22223 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CDH3P22223 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 FLII-221ENST00000578558 2377 ntTSL 5 BASIC15.13■□□□□ 0.01
CDH3P22223 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.13■□□□□ 0.01
CDH3P22223 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 TPO-203ENST00000346956 2923 ntTSL 5 BASIC15.13■□□□□ 0.01
CDH3P22223 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.13■□□□□ 0.01
CDH3P22223 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 AC098850.1-201ENST00000419919 790 ntBASIC15.13■□□□□ 0.01
CDH3P22223 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC15.13■□□□□ 0.01
CDH3P22223 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC15.13■□□□□ 0.01
CDH3P22223 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 ELK1P1-201ENST00000485699 580 ntBASIC15.13■□□□□ 0.01
CDH3P22223 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
CDH3P22223 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CDH3P22223 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
CDH3P22223 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CDH3P22223 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
CDH3P22223 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
CDH3P22223 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
CDH3P22223 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
CDH3P22223 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms