Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.45□□□□□ -0.1
LDB3O75112 AL596325.1-201ENST00000563991 1082 ntBASIC14.45□□□□□ -0.1
LDB3O75112 AC007787.1-201ENST00000588095 1583 ntBASIC14.45□□□□□ -0.1
LDB3O75112 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC14.45□□□□□ -0.1
LDB3O75112 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
LDB3O75112 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
LDB3O75112 CU634019.7-201ENST00000624153 1185 ntBASIC14.45□□□□□ -0.1
LDB3O75112 FP236241.2-201ENST00000624906 1185 ntBASIC14.45□□□□□ -0.1
LDB3O75112 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.45□□□□□ -0.1
LDB3O75112 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC14.45□□□□□ -0.1
LDB3O75112 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 AP000845.1-201ENST00000581677 2131 ntBASIC14.45□□□□□ -0.1
LDB3O75112 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC14.45□□□□□ -0.1
LDB3O75112 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC14.45□□□□□ -0.1
LDB3O75112 AL161772.1-201ENST00000610494 4412 ntBASIC14.45□□□□□ -0.1
LDB3O75112 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC14.45□□□□□ -0.1
LDB3O75112 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.45□□□□□ -0.1
LDB3O75112 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
LDB3O75112 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.44□□□□□ -0.1
LDB3O75112 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.44□□□□□ -0.1
LDB3O75112 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.44□□□□□ -0.1
LDB3O75112 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.44□□□□□ -0.1
LDB3O75112 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LDB3O75112 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.44□□□□□ -0.1
LDB3O75112 TEX30-203ENST00000376022 828 ntTSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.44□□□□□ -0.1
LDB3O75112 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
LDB3O75112 PTPA-220ENST00000436883 532 ntTSL 4 BASIC14.44□□□□□ -0.1
LDB3O75112 RN7SL752P-201ENST00000463779 287 ntBASIC14.44□□□□□ -0.1
LDB3O75112 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC14.44□□□□□ -0.1
LDB3O75112 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC14.44□□□□□ -0.1
LDB3O75112 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.44□□□□□ -0.1
LDB3O75112 AC105233.6-201ENST00000642093 218 ntBASIC14.44□□□□□ -0.1
LDB3O75112 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.44□□□□□ -0.1
LDB3O75112 AC011270.2-201ENST00000624293 2550 ntBASIC14.44□□□□□ -0.1
LDB3O75112 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC14.44□□□□□ -0.1
LDB3O75112 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
LDB3O75112 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.44□□□□□ -0.1
LDB3O75112 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
LDB3O75112 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 MROH4P-201ENST00000431302 1578 ntBASIC14.43□□□□□ -0.1
LDB3O75112 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.43□□□□□ -0.1
LDB3O75112 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.43□□□□□ -0.1
LDB3O75112 CROT-201ENST00000331536 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 TCAF2P1-201ENST00000291129 2421 ntBASIC14.43□□□□□ -0.1
LDB3O75112 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
LDB3O75112 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
LDB3O75112 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
LDB3O75112 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.43□□□□□ -0.1
LDB3O75112 AC098614.1-201ENST00000368528 745 ntBASIC14.43□□□□□ -0.1
LDB3O75112 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 EDF1-203ENST00000371649 790 ntTSL 2 BASIC14.43□□□□□ -0.1
LDB3O75112 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LDB3O75112 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms