Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 AP001043.1-206ENST00000613045 730 ntTSL 5 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 AC004466.2-201ENST00000614749 516 ntBASIC11.62□□□□□ -0.55
COL6A5A8TX70 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 RN7SKP109-201ENST00000410592 316 ntBASIC11.62□□□□□ -0.55
COL6A5A8TX70 AL357833.1-201ENST00000413993 832 ntTSL 3 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 AP002856.2-201ENST00000416553 584 ntTSL 3 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 TGFBI-207ENST00000508076 1034 ntTSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 MFF-204ENST00000353339 2186 ntTSL 5 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 SERPINA1-209ENST00000449399 1559 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
COL6A5A8TX70 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
COL6A5A8TX70 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 MBP-201ENST00000354542 575 ntTSL 2 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 Metazoa_SRP.4-201ENST00000366232 298 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 PLA2G2A-201ENST00000375111 970 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 RN7SL602P-201ENST00000578326 324 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 RN7SL718P-201ENST00000581254 303 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 FAAP24-203ENST00000589646 836 ntTSL 3 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 LINC01082-201ENST00000601250 441 ntTSL 2 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 SRP19-208ENST00000621420 1270 ntTSL 3 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC012508.2-201ENST00000567613 1472 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC006449.5-201ENST00000610658 2098 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 PGR-209ENST00000617858 2816 ntTSL 5 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC055811.4-201ENST00000624039 1754 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC060834.1-201ENST00000443027 2032 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC090136.2-201ENST00000517809 420 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 URB1-AS1-201ENST00000534991 831 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 OR3A1-202ENST00000615105 966 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 Metazoa_SRP.210-201ENST00000637921 244 ntBASIC11.61□□□□□ -0.55
COL6A5A8TX70 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
COL6A5A8TX70 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
COL6A5A8TX70 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms