Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC17.19■□□□□ 0.34
COL4A3BPQ9Y5P4 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 AC079776.1-201ENST00000401540 1152 ntBASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 ARSEP1-201ENST00000420443 635 ntBASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 NOP2-220ENST00000545915 630 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 MIR5189-201ENST00000577370 114 ntBASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 AC023024.2-201ENST00000623561 1993 ntBASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL4A3BPQ9Y5P4 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 AC112492.5-201ENST00000421897 457 ntBASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 ACTG1P3-201ENST00000431775 1114 ntBASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 USP32P1-208ENST00000506594 1164 ntBASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 AC107373.2-201ENST00000607735 490 ntBASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 CICP11-201ENST00000434745 2827 ntBASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL4A3BPQ9Y5P4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL4A3BPQ9Y5P4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms