Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AC120045.2-201ENST00000567334 178 ntBASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 PRSS30P-206ENST00000641773 873 ntBASIC16.43■□□□□ 0.22
SIX2Q9NPC8 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 AC023090.2-201ENST00000625182 2110 ntBASIC16.43■□□□□ 0.22
SIX2Q9NPC8 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.43■□□□□ 0.22
SIX2Q9NPC8 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 AMT-204ENST00000427987 1646 ntTSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 MEP1AP4-201ENST00000423244 1087 ntBASIC16.42■□□□□ 0.22
SIX2Q9NPC8 AC093004.1-201ENST00000508850 424 ntBASIC16.42■□□□□ 0.22
SIX2Q9NPC8 AC055876.2-201ENST00000531834 546 ntBASIC16.42■□□□□ 0.22
SIX2Q9NPC8 AC124283.3-201ENST00000570869 594 ntBASIC16.42■□□□□ 0.22
SIX2Q9NPC8 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 AC005089.1-201ENST00000619486 2241 ntBASIC16.42■□□□□ 0.22
SIX2Q9NPC8 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 FES-203ENST00000394302 2133 ntTSL 5 BASIC16.42■□□□□ 0.22
SIX2Q9NPC8 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 INTS4P2-202ENST00000614726 2019 ntBASIC16.41■□□□□ 0.22
SIX2Q9NPC8 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.41■□□□□ 0.22
SIX2Q9NPC8 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 AL645937.2-201ENST00000396808 931 ntBASIC16.41■□□□□ 0.22
SIX2Q9NPC8 OSM-203ENST00000403463 464 ntTSL 3 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 INGX-202ENST00000489074 768 ntBASIC16.41■□□□□ 0.22
SIX2Q9NPC8 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 AC027796.2-201ENST00000575326 344 ntBASIC16.41■□□□□ 0.22
SIX2Q9NPC8 SPDYE22P-201ENST00000582158 798 ntBASIC16.41■□□□□ 0.22
SIX2Q9NPC8 AC093813.1-201ENST00000605066 256 ntBASIC16.41■□□□□ 0.22
SIX2Q9NPC8 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC16.41■□□□□ 0.22
SIX2Q9NPC8 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms