Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
KRT39Q6A163 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.6■□□□□ 0.25
KRT39Q6A163 MARS-233ENST00000628866 2583 ntTSL 5 BASIC16.6■□□□□ 0.25
KRT39Q6A163 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
KRT39Q6A163 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
KRT39Q6A163 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
KRT39Q6A163 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.6■□□□□ 0.25
KRT39Q6A163 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
KRT39Q6A163 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
KRT39Q6A163 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.59■□□□□ 0.25
KRT39Q6A163 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.59■□□□□ 0.25
KRT39Q6A163 C1QBPP1-201ENST00000400117 770 ntBASIC16.59■□□□□ 0.25
KRT39Q6A163 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC16.59■□□□□ 0.25
KRT39Q6A163 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.59■□□□□ 0.25
KRT39Q6A163 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.59■□□□□ 0.25
KRT39Q6A163 AC190387.1-201ENST00000551683 408 ntBASIC16.59■□□□□ 0.25
KRT39Q6A163 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 AL359711.2-201ENST00000563105 872 ntBASIC16.59■□□□□ 0.25
KRT39Q6A163 AC124283.3-201ENST00000570869 594 ntBASIC16.59■□□□□ 0.25
KRT39Q6A163 AC140912.1-201ENST00000577171 1054 ntBASIC16.59■□□□□ 0.25
KRT39Q6A163 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.59■□□□□ 0.25
KRT39Q6A163 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.59■□□□□ 0.25
KRT39Q6A163 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.59■□□□□ 0.25
KRT39Q6A163 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 MTA2-201ENST00000278823 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC16.59■□□□□ 0.25
KRT39Q6A163 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
KRT39Q6A163 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
KRT39Q6A163 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.59■□□□□ 0.25
KRT39Q6A163 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.25
KRT39Q6A163 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
KRT39Q6A163 ACE3P-201ENST00000423435 1973 ntBASIC16.58■□□□□ 0.25
KRT39Q6A163 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
KRT39Q6A163 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.58■□□□□ 0.25
KRT39Q6A163 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
KRT39Q6A163 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
KRT39Q6A163 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
KRT39Q6A163 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
KRT39Q6A163 AC011270.2-201ENST00000624293 2550 ntBASIC16.58■□□□□ 0.25
KRT39Q6A163 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
KRT39Q6A163 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
KRT39Q6A163 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
KRT39Q6A163 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
KRT39Q6A163 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.58■□□□□ 0.24
KRT39Q6A163 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 AL645937.2-201ENST00000396808 931 ntBASIC16.58■□□□□ 0.24
KRT39Q6A163 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
KRT39Q6A163 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.58■□□□□ 0.24
KRT39Q6A163 GALT-202ENST00000450095 1280 ntTSL 2 BASIC16.58■□□□□ 0.24
KRT39Q6A163 ELK1P1-201ENST00000485699 580 ntBASIC16.58■□□□□ 0.24
KRT39Q6A163 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.58■□□□□ 0.24
KRT39Q6A163 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.58■□□□□ 0.24
KRT39Q6A163 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
KRT39Q6A163 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.58■□□□□ 0.24
KRT39Q6A163 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.58■□□□□ 0.24
KRT39Q6A163 AC092364.2-202ENST00000597012 1073 ntBASIC16.58■□□□□ 0.24
KRT39Q6A163 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
KRT39Q6A163 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC16.58■□□□□ 0.24
KRT39Q6A163 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.58■□□□□ 0.24
KRT39Q6A163 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
KRT39Q6A163 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms