Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.51□□□□□ -0.41
LMO4P61968 KC6-205ENST00000599934 556 ntTSL 4 BASIC12.51□□□□□ -0.41
LMO4P61968 KLK11-210ENST00000600362 759 ntTSL 3 BASIC12.51□□□□□ -0.41
LMO4P61968 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC12.51□□□□□ -0.41
LMO4P61968 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
LMO4P61968 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
LMO4P61968 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
LMO4P61968 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC12.51□□□□□ -0.41
LMO4P61968 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
LMO4P61968 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
LMO4P61968 AC087481.3-201ENST00000602886 1894 ntBASIC12.51□□□□□ -0.41
LMO4P61968 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
LMO4P61968 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC12.5□□□□□ -0.41
LMO4P61968 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC12.5□□□□□ -0.41
LMO4P61968 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
LMO4P61968 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 AC008894.3-201ENST00000624324 3103 ntBASIC12.5□□□□□ -0.41
LMO4P61968 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC12.5□□□□□ -0.41
LMO4P61968 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
LMO4P61968 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC12.5□□□□□ -0.41
LMO4P61968 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
LMO4P61968 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 NDUFAB1P1-201ENST00000404262 460 ntBASIC12.5□□□□□ -0.41
LMO4P61968 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.5□□□□□ -0.41
LMO4P61968 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.5□□□□□ -0.41
LMO4P61968 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 AC100850.1-201ENST00000506768 649 ntBASIC12.5□□□□□ -0.41
LMO4P61968 AC126915.1-201ENST00000522847 1038 ntBASIC12.5□□□□□ -0.41
LMO4P61968 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC12.5□□□□□ -0.41
LMO4P61968 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC12.5□□□□□ -0.41
LMO4P61968 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC12.5□□□□□ -0.41
LMO4P61968 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC12.5□□□□□ -0.41
LMO4P61968 DIO1-215ENST00000610607 796 ntTSL 5 BASIC12.5□□□□□ -0.41
LMO4P61968 AP001002.3-201ENST00000623482 206 ntBASIC12.5□□□□□ -0.41
LMO4P61968 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 AP000593.2-201ENST00000542775 1433 ntBASIC12.5□□□□□ -0.41
LMO4P61968 AC138028.6-201ENST00000616106 1482 ntBASIC12.5□□□□□ -0.41
LMO4P61968 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC12.5□□□□□ -0.41
LMO4P61968 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC12.5□□□□□ -0.41
LMO4P61968 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 BID-213ENST00000615414 2236 ntTSL 5 BASIC12.5□□□□□ -0.41
LMO4P61968 AL359258.3-201ENST00000622910 2331 ntBASIC12.5□□□□□ -0.41
LMO4P61968 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC12.5□□□□□ -0.41
LMO4P61968 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
LMO4P61968 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC12.5□□□□□ -0.41
LMO4P61968 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
LMO4P61968 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
LMO4P61968 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.49□□□□□ -0.41
LMO4P61968 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.49□□□□□ -0.41
LMO4P61968 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC12.49□□□□□ -0.41
LMO4P61968 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LMO4P61968 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC12.49□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms